Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1734 114 1e-19 seq11140 113 3e-19 >seq1734 Length=23643 Score = 114 bits (126), Expect = 1e-19 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| |||||| || |||||||| || || || | || ||| Sbjct 2172 TTCTTGTCCAGACCATAAGCAATAGCAGCTGCCGTTGGTTCGTTGATGATACGCATGACA 2231 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| | || ||||| || ||||| ||||| || ||||||||||| || Sbjct 2232 TTGAGACCAGCAATGGTGCCAGCATCCTTTGTGGCCTGTCTCTGGGAATCGTTAAAGTAC 2291 Query 282452 GCAGGAACAGT 282462 |||||||| || Sbjct 2292 GCAGGAACTGT 2302 >seq11140 Length=102341 Score = 113 bits (124), Expect = 3e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 1078933 ATCCAAAATGATCATGAGCAATATCTACAGTGTGAACATACCAATTTTCATTATaaaaaa 1078992 |||||||||| |||||||||||||||||||| | | ||||| | ||| || ||||| | Sbjct 50033 ATCCAAAATGGTCATGAGCAATATCTACAGTCCGTAAGTACCAGTCTTCTTTGTAAAACA 49974 Query 1078993 aaTCAACAATATATATCAATTGTAAAATAATAACAAGAATCATTGAATTAGAAACGTATC 1079052 | || | | ||| | ||| | || | | || | |||||| ||||| | ||| || | Sbjct 49973 AGTCTATCACATAGAGTCCTTGGAGAAGATTGACTAAAATCATAGAATTTGTAACATAGC 49914 Query 1079053 CAAAATTTTCGTATTGTTTCATTGCACACGACAAATTAATCAAATTCCAAGCAATAATTC 1079112 ||| || | || || |||| ||||| || || ||||| ||| |||| ||| ||| | Sbjct 49913 CAATGTTGTGATACTGCTTCACAGCACAAGATAAGTTAATTAAAGTCCATCCAAGAATGC 49854 Query 1079113 CGGGTCTACCATTAAAAAACAGTTTCAAATCA 1079144 | |||||| ||||| || | || |||||| Sbjct 49853 CAGGTCTAGTGTTAAAGAATAACTTGAAATCA 49822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739840252613244