Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq16078 120 7e-22 seq1223 86.0 1e-11 >seq16078 Length=592481 Score = 120 bits (132), Expect = 7e-22 Identities = 180/249 (72%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 7436 TGGAAACGTTATATTTAATATTTGGTGGCTTT-TCTGGTATTATAGGTACTATATTTTCT 7494 ||| ||| | ||||| ||||||| |||||| ||||| || | || ||| ||||| Sbjct 433469 TGGGAACTCTCTATTTGGTATTTGG-GGCTTTCTCTGGAATGGTTGGGACTGCCTTTTCA 433411 Query 7495 ATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAA 7554 ||| | |||||| | ||| | | || || || | | || ||| | | | | |||| Sbjct 433410 ATGTTAATAAGGCTTGAACTCTCCGCCCCTGGGTAT---ATGTTGGGGGATGA---CCAA 433357 Query 7555 CTTT-ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCC 7613 |||| | || |||||| |||| || ||||| ||||| ||||| || ||||| || ||||| Sbjct 433356 CTTTTATAATGTTATTGTTACTGCTCATGCTTTTGTAATGATATT-TTTTTGGTAATGCC 433298 Query 7614 GGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATAT 7673 ||||||||||| || ||||| ||||| | || ||||| || || || || ||||| Sbjct 433297 TGTTATGATAGGAGGCTTCGGTAATTGGCTAGTCCCTTTGTACATCGGGGCCCCCGATAT 433238 Query 7674 GGCTTTTCC 7682 |||||| || Sbjct 433237 GGCTTTCCC 433229 >seq1223 Length=647266 Score = 86.0 bits (94), Expect = 1e-11 Identities = 81/100 (81%), Gaps = 5/100 (5%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTG--ATAAAGGATAGGATCGCCTCCGCCTG 370730 ||||| ||||| |||| || ||||| ||||| ||||| |||||||||||||| |||| Sbjct 530380 TCAGGGTGACCGAAAAC-CAAAATAAGTGTTGGAATAAA--ATAGGATCGCCTCCCCCTG 530436 Query 370731 ATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || || ||||| ||||||||||||| ||||| ||||| Sbjct 530437 CAGGGTCGAAAAACGTAGTATTAAAATTCCTATCGGTTAA 530476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192285294849236