Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq78 95.1 1e-14 seq85 86.0 5e-12 >seq78 Length=312069 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | ||| || | ||| | || |||||||| |||||||| ||||| | Sbjct 172032 TTCCTCCCCTGAGGCGGAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGG 171973 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || | || || || || ||||| || | ||||| | ||||||||| | Sbjct 171972 AAAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTG 171913 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | ||| || ||| ||||| Sbjct 171912 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAA 171853 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||| | ||| |||||||| ||||| | ||||| || || |||||||| || Sbjct 171852 CTTCAAGGGTGATGGTCTTTCCGGTAAGTGTTTTCACGAAGATTTGCATCTT 171801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | ||| || | ||| | || ||||| ||||| ||||| || || | Sbjct 172488 TTCCTCCCCTGAGGCGGAGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAG 172429 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || | || || ||||| ||||| ||| | ||||| | |||||| || | Sbjct 172428 ACAAAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTG 172369 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||| ||| || | | | ||||| ||||| Sbjct 172368 GAATTCCTTCCTTGTCTTGAATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAA 172309 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | ||||||||||| ||||| || || |||||||| ||||||||| Sbjct 172308 CTTCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 172259 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | ||| || | ||| | ||||| || || || ||||| || || | Sbjct 172260 TTCCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAG 172201 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || | || || ||||| || || ||| | ||||| | ||||||||| | Sbjct 172200 ACAAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTG 172141 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | | | ||| ||| ||||| Sbjct 172140 GGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAA 172081 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | || |||||||| ||||| | || || || || ||||||||| Sbjct 172080 CTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCATT 172031 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| || | ||| | || ||||||||||||||||| ||||| | || Sbjct 172939 CCCCTC--AGGCGGAGAACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACA 172882 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 || || | || |||| ||| || || ||| | ||||| | ||| || || || | Sbjct 172881 AAGTACGGCCATCTTCCAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGA 172822 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||||| |||||| || || | | | |||||| ||||| || Sbjct 172821 TTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTT 172762 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 | | || |||||||| ||||| | || || || || || |||||| Sbjct 172761 CAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172715 >seq85 Length=280044 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 20986 CCTTT-TGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAA 21044 ||||| || |||||||| || | |||||| | | ||||||| |||||| || ||| | Sbjct 114615 CCTTTCTGGATGTTATAATCAGAGAGGGTTCGACCATCCTCCAACTGTTTACCAGCAAAG 114556 Query 21045 ATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGG 21104 || |||| ||||||||| || | |||||||||||| |||||| || || | Sbjct 114555 ATGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTT 114496 Query 21105 CCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACA 21164 | | |||||| ||||| || | || |||||||| || || | || |||||| Sbjct 114495 TCTATGGTATCAGAAGGCTCGACCTCTAGCGTGATGGTCTTCCCAGTGAGAGTCTTGACA 114436 Query 21165 AATATTTGCATTTTGAA 21181 || || ||||| || || Sbjct 114435 AAAATCTGCATCTTTAA 114419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422190250086968