Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq78 118 1e-21 seq85 98.7 1e-15 >seq78 Length=312069 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| ||||| || || || || ||||||||| | || || || | Sbjct 171800 AAAGATGCAAATCTTCGTGAAAACACTTACCGGAAAGACCATCACCCTTGAAGTTGAGCC 171859 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | | |||| |||||| || || | ||||| || || ||||| | | Sbjct 171860 TTCTGACACAATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTG 171918 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| || || |||| ||| ||||| || || || || | || || || ||||| Sbjct 171919 ACCAGCAGCGTCTTATCTTCGCTGGCAAGCAACTTGAAGATGGCCGTACTCTTTCCGACT 171978 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| ||||||||| | || || ||||| || | ||| | ||||| || Sbjct 171979 ACAACATTCAGAAGGAGTCTACCCTTCATCTTGTTCTCCGCCTCAGGGGAGG 172030 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || || || || |||||||| | || || || | | Sbjct 172031 AATGCAAATCTTCGTGAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172090 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| |||||| || || | ||||| || || ||||| | |||| Sbjct 172091 TGACACTATTGAGAACG-TCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACC 172149 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| || || || ||||| || || | ||||| | || |||| Sbjct 172150 AGCAGCGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACA 172209 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| || |||| || ||||| || | ||| | || || || Sbjct 172210 ACATCCAGAAAGAATCCACACTCCATCTTGTTCTCCGCCTCAGAGGAGG 172258 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| || || || || || |||||||| | || || || | | Sbjct 172487 AATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172546 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | || | ||||| | |||||||| || ||||| | || || Sbjct 172547 TGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCCGATCA 172606 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||| |||| || | || || || ||| ||||| Sbjct 172607 GCAGCGTCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAA 172666 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| ||||| | || || ||||| || | ||| | ||||| || Sbjct 172667 CATCCAAAAGGAATCTACACTCCATCTTGTTCTCCGCCTCAGGGGAGG 172714 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| || || || || || |||||||| | || || || | | Sbjct 172715 AATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172774 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | |||||| || || | ||||| || || ||||| | || || Sbjct 172775 TGATACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCTGATCA 172834 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| || || || ||| |||| || | || || | |||||||| Sbjct 172835 ACAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACAA 172894 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || |||||| | || || ||||| || | ||| ||||||| || Sbjct 172895 CATTCAAAAGGAGTCTACACTTCATCTTGTTCTCCGCCTGAGGGGTGG 172942 >seq85 Length=280044 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| || || |||||||| | || ||||| | Sbjct 114421 AAAGATGCAGATTTTTGTCAAGACTCTCACTGGGAAGACCATCACGCTAGAGGTCGAGCC 114480 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | ||| | |||| || || | ||||| || |||||||| | || Sbjct 114481 TTCTGATACCATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGA 114540 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||||||||| || || |||||| |||| || | || |||||| || || Sbjct 114541 CCAGCAGCGACTCATCTTTGCTGGTAAACAGTTGGAGGATGGTCGAACCCTCTCTGATTA 114600 Query 40866 CAACATCCAGAA 40877 ||||||||||| Sbjct 114601 TAACATCCAGAA 114612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515132913664480