Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq89 158 2e-33 seq431 116 6e-21 seq523 96.9 5e-15 seq78 93.3 6e-14 seq63 84.2 3e-11 >seq89 Length=276290 Score = 158 bits (174), Expect = 2e-33 Identities = 186/248 (75%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| |||| || || || || ||||| || ||| | || ||||| | | Sbjct 106152 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106211 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| ||||| || || || || ||||||||||| || ||||||||||| Sbjct 106212 GATACTATGGAGAATATTAAAGCA-AAGATACAGGATAAAGAAGGAATCCCACCTGATCA 106270 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || ||||| || | |||||| || ||| |||| ||| | ||||||||| Sbjct 106271 ACAGAGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCGTACACTCTCAGATTATAA 106330 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 |||||||||||| || |||||||| || | ||| |||||||| || ||| ||| Sbjct 106331 CATTCAAAAAGAAAGTACGTTGCATTTAGTACTTCGTCGTCGAGGTGGCATGCAAATATT 106390 Query 124777 CATAAAAA 124784 |||||| Sbjct 106391 TGTAAAAA 106398 Score = 138 bits (152), Expect = 2e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| |||| || || || || ||||| || ||| | || ||||| | | Sbjct 106380 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106439 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| || || || || ||||||||||| || ||||||||||| Sbjct 106440 GATACTATTGAGAATGTTAAAGCA-AAGATACAGGATAAAGAAGGAATCCCACCTGATCA 106498 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || ||||| || ||| ||| || ||| |||| ||| | ||||||||| Sbjct 106499 ACAGAGACTCATATTTGCTGGTAAAATATTGGAAGATGGTCGTACACTCTCAGATTATAA 106558 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGA 124760 |||||||| ||| || || ||||| || | |||| ||| Sbjct 106559 CATTCAAAAGGAAAGTACATTACATTTAGTACTTTGTTTTCGA 106601 Score = 120 bits (132), Expect = 5e-22 Identities = 146/198 (74%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 124588 TTGAAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATAC 124647 |||| || | |||||| || | | | ||| ||||||| || || |||||||| || | Sbjct 105973 TTGAGGCTAGTGATACCGTTGAAAGTGTGAAAGAGAAAATACAGGACAAAGAAGGAATCC 106032 Query 124648 CACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAG 124707 ||||||||||||| || || || |||| || |||||||| || || |||| ||| | Sbjct 106033 CACCTGATCAACAGAGACTGATATTTGTTGGTAAACAATTGGAAAATGGTCGTACACTCT 106092 Query 124708 AAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 ||||||||| |||||||| ||| ||||| ||||| || | ||| | ||||||| | Sbjct 106093 CAGATTATAACATTCAAAATGAAAGTACTTTACATTTAGTACTTCGTCTTAGAGGTGGCA 106152 Query 124768 T-TAAAAATTCATAAAAA 124784 | ||| ||| |||||| Sbjct 106153 TGCAAATATTTGTAAAAA 106170 Score = 111 bits (122), Expect = 2e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| |||| || || || || | ||| || ||| | || ||||| | | Sbjct 107805 ATGCAAATATTTGTAAAAACTCTGACTGGTAGAACAATTACTCTTGAAGTTGAACCTTCT 107864 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| || || || || ||||||||||| || ||||||||||| Sbjct 107865 GATACTATTGAGAATGTTAAAGCA-AAGATACAGGATAAAGAAGGAATCCCACCTGATCA 107923 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || ||||| || ||| ||| | ||| ||| ||| | ||||||||| Sbjct 107924 ACAGAGACTCATATTTGCTGGTAAAGTATTGGTAGATGATCGTACACTCTCAGATTATAA 107983 Query 124718 TATTCAAA 124725 ||| ||| Sbjct 107984 CATTAAAA 107991 >seq431 Length=85469 Score = 116 bits (128), Expect = 6e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 124550 TATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTC 124609 |||||| || || || || ||| | || ||| | | ||||| | |||||| ||| Sbjct 81034 TATAAAAACTCTGACCGGTAAAGCGATTACTCTTGGAGTTGAACCTTCTGATACTATTGA 81093 Query 124610 TAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTAT 124669 ||| | ||| ||| || || ||||||||||| || |||||||||||||| |||||| | Sbjct 81094 GAATGTTAAAGCGAAGATACAGGATAAAGAAGGAATCCCACCTGATCAACAGAGGCTTTT 81153 Query 124670 TTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGA 124729 ||||| || ||| ||| || |||||||| ||| | ||||||||| ||| || || Sbjct 81154 ATTTGCTGGTAAAGTATTGGAAGATAGTCGTACACTCTCAGATTATAAAATTTCAATGGA 81213 Query 124730 ATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 | | ||||||| || | ||| | ||||||||| Sbjct 81214 AAATATAATGCATTTAGTACTCCGTCTTCGAGGTGGT 81250 Score = 100 bits (110), Expect = 4e-16 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| ||| ||||| || || || || ||| ||| ||| || || |||||| Sbjct 84532 TGATACTATTGAAAATGTTAAAGCA-AAGATACAGGATGAAGTAGGAATCTCATCTGATC 84590 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| |||||| | ||||| || ||||||||||| ||| || | ||| | |||||||| Sbjct 84591 AACAGAGGCTTGTATTTGCTGGTAAACAATTAGAAGATGGTTGTACACTCTCAGATTATA 84650 Query 124717 ATATTCAAAAAGAA 124730 |||||||||| ||| Sbjct 84651 ATATTCAAAAGGAA 84664 Score = 96.9 bits (106), Expect = 5e-15 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 || || || || || ||||| || ||| | || ||| | | |||||| ||| ||| Sbjct 84018 AAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGTATCTTCTGATACTATTGAGAAT 84077 Query 124614 -TTAAAACAGAAAATTCAAGATA--AAGAAGGTATACCACCTGATCAACAAAGGCTTATT 124670 ||||| || | | || |||| ||||||| || |||||||||||||| || || || Sbjct 84078 GTTAAAGGAGCTA-TACAGGATATGAAGAAGGAATCCCACCTGATCAACAGAGACTCATA 84136 Query 124671 TTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAA 124730 | ||| || | |||||| || ||| || | ||| | ||||||||||||||||| ||| Sbjct 84137 TATGCTGGTAGACAATTGGAAGATGGTTGTACACTCTCAGATTATAATATTCAAACGGAA 84196 Query 124731 TCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || | ||||| || | |||| ||||||||| Sbjct 84197 AGCACAATACATTTAGTACTTCGTTATCGAGGTGGT 84232 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/173 (73%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 124557 ACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA---TGATACAATTTCTAAT 124613 || || || || |||| || ||| | || ||||| | | |||||| ||| ||| Sbjct 84254 ACTCTGACTGGTAAAAGAATTACTCTTGAAGTTGAACCTAGCTCTGATACTATTGAAAAT 84313 Query 124614 -TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672 ||||| || || || || ||| ||| ||| || |||||||||||||| || || || || Sbjct 84314 GTTAAAGCA-AAGATACAGGATGAAGTAGGAATCCCACCTGATCAACAGAGACTCATATT 84372 Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAA 124725 ||| || ||||||||||| ||| || | ||| | ||||||||| ||||||| Sbjct 84373 TGCTGGTAAACAATTAGAAGATGGTTGCACACTCTCAGATTATAACATTCAAA 84425 Score = 89.7 bits (98), Expect = 8e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || || || ||||||| ||| || ||||||||||| Sbjct 81319 TGATACTATTGAGAATATCAAAGCCAAGATACAGGATAAAGTAGGAATCCCACCTGATCA 81378 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||| | ||||| || ||| ||| || ||| |||| ||| | | ||||||| Sbjct 81379 ACAGAGGCTTTTATTTGCTGGTAAAGTATTGGAAGATGGTCGTACACTCTTACATTATAA 81438 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTT 124749 | || |||| || | ||| || ||||||| Sbjct 81439 TCTTAAAAACAAAAGTATTTTACACTTGGTTT 81470 >seq523 Length=66199 Score = 96.9 bits (106), Expect = 5e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||| ||||||| |||||||||| |||||| |||| | |||||| |||| ||| || ||| Sbjct 29128 AAATTTCAAGACAAAGAAGGTACTCCACCTCATCAGCTAAGGCTCATTTATGCTGGCAAA 29187 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 ||| | || || ||| || ||| |||||||||||||||| |||||| || Sbjct 29188 CAAATGGAAAATGATCGTACCTTATCCGATTATAATATTCAAAGAGAATCTAC 29240 >seq78 Length=312069 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || |||||||||| || || || || || ||| | || |||| | Sbjct 172715 AATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172774 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || || || || || || ||||| || ||||||||||| Sbjct 172775 TGATACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCTGATCA 172834 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| ||||| ||||| || || || ||| | || || || || || || Sbjct 172835 ACAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACAA 172894 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| || || || | ||| | ||| | || | | |||||| Sbjct 172895 CATTCAAAAGGAGTCTACACTTCATCTTGTTCTCCGCCTGAGGGGTGGT 172943 >seq63 Length=354714 Score = 84.2 bits (92), Expect = 3e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| ||| ||||| || || || ||||||||||||| || |||||||||| Sbjct 352633 TGATACTATTGAGAATGTTAAAGCA-AAGATAAAAGATAAAGAAGGAATCCCACCTGATC 352575 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || || || ||||| | | |||||| ||| |||| ||| | |||||||| Sbjct 352574 AGCAGAGACTCATATTTGCTTTTAGAAGATTAGAAGATGGTCGTACACTGTCAGATTATA 352515 Query 124717 ATATTCAAAA 124726 | |||||||| Sbjct 352514 ACATTCAAAA 352505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755329480006400