Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq78 129 5e-25 seq85 95.1 1e-14 >seq78 Length=312069 Score = 129 bits (142), Expect = 5e-25 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | ||||||||||||||| ||||||||||| || |||||| ||| || | Sbjct 172467 CAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTCAA 172408 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| ||||||||||||||||| || || || ||||||||| || Sbjct 172407 GCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTGAA 172348 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | ||| | ||| || | ||| || || | || | || || | Sbjct 172347 TCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTTTC 172288 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| || ||||| || ||||| Sbjct 172287 CGGTCAAAGTCTTGACAAAGATTTGCAT 172260 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| |||||| || ||||| |||||||||||| | ||| || ||| || | Sbjct 172695 CAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCA 172636 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| ||||| || |||| ||||||||||||||||| || || || || |||||| | Sbjct 172635 ACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGA 172576 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| |||||| | ||| | ||||| | ||| || || | || | || || | Sbjct 172575 TTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTC 172516 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || ||||| ||||||||||| Sbjct 172515 CGGTAAGTGTCTTTACGAAAATCTGCAT 172488 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | ||||||||| |||||||||||||| || || ||| || ||| || | Sbjct 172923 CAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCA 172864 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| |||||||| |||| |||||||| ||||| || || || || |||||||| | Sbjct 172863 ACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGGA 172804 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | ||| || | ||| || || | || | || || | Sbjct 172803 TCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTC 172744 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || ||||| ||||||||||| Sbjct 172743 CGGTAAGTGTCTTTACGAAAATCTGCAT 172716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||||||||| ||| | ||| || ||| || || || || ||| Sbjct 172000 GTAGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGTTGCTTGCCA 171941 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| || || || || || ||||||||| || || || Sbjct 171940 GCGAAGATAAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 171881 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||| || || | ||| | || || ||||| || ||| Sbjct 171880 ACGTTCTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTGATGGTCTTTCCGGTAAGTGTT 171821 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 171820 TTCACGAAGATTTGCAT 171804 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| || ||||| || ||||||||||| || |||||| ||| || | Sbjct 172239 CAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTCAA 172180 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||| ||||| || |||| ||||||||||| ||||| || || || |||||||| Sbjct 172179 GCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATTCCTTCCTTGTC 172125 >seq85 Length=280044 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || ||||| ||||| | || || |||||| | |||||| ||||| ||| Sbjct 114614 CTTTCTGGATGTTATAATCAGAGAGGGTTCGACCATCCTCCAACTGTTTACCAGCAAAGA 114555 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||| |||||||| || ||||| ||||| |||||||| || || || || | || Sbjct 114554 TGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 114495 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 | | ||| || | ||||||||| | || | || || || || ||||| || |||| Sbjct 114494 CTATGGTATCAGAAGGCTCGACCTCTAGCGTGATGGTCTTCCCAGTGAGAGTCTTGACAA 114435 Query 118729 AAATCTGCAT 118738 |||||||||| Sbjct 114434 AAATCTGCAT 114425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433759560647416