Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq78 98.7 1e-15 seq131 89.7 6e-13 seq90 89.7 6e-13 >seq78 Length=312069 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | || | || | ||| | |||| || || || || |||||||||| Sbjct 172259 TCCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGA 172200 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || | || || |||||||| || || || || || ||||||||||||| || Sbjct 172199 CAAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGG 172140 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| || |||| || | | ||||| | || || Sbjct 172139 GATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAAC 172080 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||||| || || || || ||||| || |||||||||||| Sbjct 172079 TTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCATT 172031 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||||| || | || || || ||||| |||||||| Sbjct 171995 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCGAA 171936 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||| ||| || |||| | Sbjct 171935 GATAAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 171876 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| | || || || | |||||||| || || || || || || || Sbjct 171875 CTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTGATGGTCTTTCCGGTAAGTGTTTTCAC 171816 Query 43172 AAAGATTTGCATTTTT 43187 ||||||||||| ||| Sbjct 171815 GAAGATTTGCATCTTT 171800 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | || | || | ||| | ||| ||| ||||| || |||||||||| Sbjct 172487 TCCTCCCCTGAGGCGGAGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGA 172428 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || | || || |||||||| ||||| || || || |||||||| |||| || Sbjct 172427 CAAAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGG 172368 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCA 43134 | | |||||||| ||| | || | || ||| || | | ||| | || | Sbjct 172367 AATTCCTTCCTTGTCT-TGAATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAA 172309 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | || ||||| || || || | ||||| ||||||||||||||| Sbjct 172308 CTTCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 172259 >seq131 Length=226272 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 60131 || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 148591 GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAC 148533 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 60131 || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 149987 GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAC 149929 >seq90 Length=274721 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 60131 || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 272231 GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAC 272173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571721834847440