Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq89 102 1e-16 >seq89 Length=276290 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||||||||| | | ||| |||||||||||| ||| ||| || || ||||||||||| Sbjct 106150 CCACCTCTAAGACGAAGTACTAAATGTAAAGTACTTTCATTTTGA-ATGTTATAATCTGA 106092 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | || || |||||||| ||| |||| |||| ||| || ||||| || || Sbjct 106091 GAGTGTACGACCATTTTCCAATTGTTTACCAACAAATATCAGTCTCTGTTGATCAGGTGG 106032 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 106031 GATTCCTTCTTTGTCCTG 106014 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| | | | | ||| ||||| || ||| |||||| || ||||||||||| Sbjct 106378 CCACCTCGACGACGAAGTACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTGAG 106319 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || |||||| | |||||||| || | ||| || ||||| || || Sbjct 106318 AGTGTACGACCATCTTCCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGG 106259 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||||||||| || |||||| ||| ||| ||| Sbjct 106258 ATTCCTTCTTTATCCTGTATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCAACT 106199 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || ||||||||||| || | ||||| | ||||||||||| Sbjct 106198 TCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/211 (69%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCAT 146126 ||| |||||||| ||| ||| ||| || || ||||||||||| || || | | ||| | Sbjct 106589 TACTAAATGTAATGTACTTTCCTTTTGA-ATGTTATAATCTGAGAGTGTACGACCATCTT 106531 Query 146127 CTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTT 146186 | ||| ||| |||||||| || | ||| || ||||| || || |||||||||||||| | Sbjct 106530 CCAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCT 106471 Query 146187 GNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTT 146246 | |||||| ||| ||| ||||| || || ||||||| Sbjct 106470 GTATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTT 106411 Query 146247 TACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || | ||||| | ||||||||||| Sbjct 106410 TACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743401877916160