Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq78 98.7 8e-16 seq89 82.4 6e-11 >seq78 Length=312069 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| || || ||||||||||||||||| | || || | ||||||||| || Sbjct 172918 TGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGC 172859 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| ||||||| | |||||||| || | |||||||| || || | Sbjct 172858 TTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGGATCTTA 172799 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| || ||| ||||| ||||| |||||| | || ||||| Sbjct 172798 GCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTA 172739 Query 18303 AATGTTTTTACAAAAATTTGCATT 18326 | ||| ||||| ||||| |||||| Sbjct 172738 AGTGTCTTTACGAAAATCTGCATT 172715 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | || || | ||||| || || || || |||||||||||||||| Sbjct 172031 TCCTCCCCTGAGGCGGAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 171972 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||| | ||| ||||| || ||||||| | || || || || Sbjct 171971 AAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGG 171912 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || || | |||||| | | | |||||| ||||| Sbjct 171911 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAAC 171852 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||||| ||||||| | || ||||| | |||||| || || |||||||| ||| Sbjct 171851 TTCAAGGGTGATGGTCTTTCCGGTAAGTGTTTTCACGAAGATTTGCATCTTT 171800 >seq89 Length=276290 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | || | ||| ||| ||||||||||| || || | | ||| || ||| Sbjct 106592 AAGTACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATC 106533 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||||| ||| || ||| | || ||||| |||||||| || | ||||| ||||| Sbjct 106532 TTCCAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATC 106473 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 || | |||| || || | ||| ||| ||| || || ||||| || || Sbjct 106472 CTGTATCT-TTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTG 106414 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || |||| ||||||||||| |||||||| Sbjct 106413 TTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379282057629510