Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq78 122 8e-23 seq89 100 3e-16 seq85 89.7 5e-13 >seq78 Length=312069 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||||||||| || || || || || ||||| | || ||||| || || Sbjct 172488 ATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCT 172547 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || ||| | ||| ||||| ||||| | || ||||| ||| Sbjct 172548 GACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCCGATCAG 172607 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || || || ||||||||||| ||| | |||||| ||| Sbjct 172608 CAGCGTCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAAC 172667 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| ||||| || || ||||| || || | || ||||| || Sbjct 172668 ATCCAAAAGGAATCTACACTCCATCTTGTTCTCCGCCTCAGGGGAGG 172714 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||||||||| || || || || || ||||| | || ||||| || || Sbjct 172716 ATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCT 172775 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || |||||||||||| | || || || || Sbjct 172776 GATACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCTGATCAA 172835 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||||||||||| ||| || || || ||| Sbjct 172836 CAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACAAC 172895 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||| || || || |||||||| || || | |||||||| ||| Sbjct 172896 ATTCAAAAGGAGTCTACACTTCATCTTGTTCTCCGCCTGAGGGGTGGT 172943 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| || || || || || | || ||||| || ||| Sbjct 172260 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTTGAAGTTGAGCCTTCC 172319 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | || ||||||||||| | || ||||| ||| Sbjct 172320 GATACCATTGAAAACGTAAAAGCCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCAG 172379 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| ||| | ||||| ||| || ||||| ||| Sbjct 172380 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAAC 172439 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||||||| || || |||||||| || || | || ||||| || Sbjct 172440 ATCCAAAAAGAGTCTACACTTCATCTTGTTCTCCGCCTCAGGGGAGG 172486 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||| ||||| || || || || || || || |||||| | || ||||| || Sbjct 171800 AAAGATGCAAATCTTCGTGAAAACACTTACCGGAAAGACCATCACCCTTGAAGTTGAGCC 171859 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | ||||| | || ||||||||||| | || || || Sbjct 171860 TTCTGACACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGA 171919 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||||||| || ||||||||||| || | ||||| ||| | ||| || Sbjct 171920 CCAGCAGCGTCTTATCTTCGCTGGCAAGCAACTTGAAGATGGCCGTACTCTTTCCGACTA 171979 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || || || |||||||| || || | || ||||| || Sbjct 171980 CAACATTCAGAAGGAGTCTACCCTTCATCTTGTTCTCCGCCTCAGGGGAGG 172030 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || ||||| | || ||||| || || Sbjct 172032 ATGCAAATCTTCGTGAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCT 172091 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || |||||||||||| | || ||||||||| Sbjct 172092 GACACTATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAG 172151 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || || || ||| | ||||| ||| || ||||| ||| Sbjct 172152 CAGCGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAAC 172211 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| || || ||||| || || Sbjct 172212 ATCCAGAAAGAATCCACACTCCATCTTGTTCT 172243 >seq89 Length=276290 Score = 100 bits (110), Expect = 3e-16 Identities = 155/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || ||||| |||||||| || ||||| || || | || |||||||| || Sbjct 106151 CATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTC 106210 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | | || | | ||| || ||| || ||| || ||||| | || || || | Sbjct 106211 TGATACTATGGAGAATATTAAAGCAAAGA-TACAGGATAAAGAAGGAATCCCACCTGATC 106269 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTA 31368 | ||| | || ||||| ||||| | ||| |||||||| || ||| | || |||| Sbjct 106270 AACAGAGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCGTACACTCTCAG--ATTA 106327 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||||||||||| || | ||| | |||||| Sbjct 106328 TAACATTCAAAAAGAAAGTACGTTGCATTTAGTACTT 106364 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || ||||| |||||||| || ||||| || || | || |||||||| || Sbjct 106379 CATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTC 106438 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | | || | || ||| || ||| || ||| || ||||| | || || || | Sbjct 106439 TGATACTATTGAGAATGTTAAAGCAAAGA-TACAGGATAAAGAAGGAATCCCACCTGATC 106497 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTA 31368 | ||| | || ||||| ||||| ||| |||||||| || ||| | || |||| Sbjct 106498 AACAGAGACTCATATTTGCTGGTAAAATATTGGAAGATGGTCGTACACTCTCAG--ATTA 106555 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||||||| ||| || | ||| | |||||| Sbjct 106556 TAACATTCAAAAGGAAAGTACATTACATTTAGTACTT 106592 >seq85 Length=280044 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| ||||| || |||||||| || || || || ||||| | || || || || Sbjct 114421 AAAGATGCAGATTTTTGTCAAGACTCTCACTGGGAAGACCATCACGCTAGAGGTCGAGCC 114480 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | |||| || || | || ||||||||||||| | || || || Sbjct 114481 TTCTGATACCATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGA 114540 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| || || || ||||| ||||||||||| || | || | ||||| Sbjct 114541 CCAGCAGCGACTCATCTTTGCTGGTAAACAGTTGGAGGATGGTCGAACCCTCTCTGATTA 114600 Query 31369 TAACATTCAAAAAG 31382 |||||| || |||| Sbjct 114601 TAACATCCAGAAAG 114614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445691745272160