Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq576 87.8 2e-12 >seq576 Length=57293 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/158 (73%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 33229 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAA---TGATT-GTCTTCTTGAGACATAACT 33284 ||| ||||||||| || | ||||||| || || | |||||||| | ||| ||| Sbjct 19894 TGTCTCTTTAAAACTCTGCCTCTAAAGTGAAGACGTGCTCAGTCTTCTT-ACTCATGACT 19836 Query 33285 CCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGAT 33344 || || || || ||||| || | || || || |||||||| ||||| |||| || Sbjct 19835 CCTGACTTCTGATAATCACCGACCCTCTTCTCAAAGAAATTAGTCTTTCCCTCCAGAGAG 19776 Query 33345 ATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 ||||| |||||||||||||| ||||| | |||||||| Sbjct 19775 ATATTCTCCATGAAATCAAAAGGATTACTGACATTGTA 19738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629712121297440