Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq78 127 2e-24 seq89 89.7 5e-13 >seq78 Length=312069 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||||||||| ||||| ||||| || |||| ||||| ||||| Sbjct 172462 TGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTCAAGCTGC 172403 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| ||||| ||||||||||| || || ||||| ||||| ||| | || Sbjct 172402 TTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTC-TTGAATCTT 172344 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||||| | ||| | || |||| ||||| || |||| || | ||||| ||||| Sbjct 172343 GGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTTTCCGGT 172284 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || || || |||||||| Sbjct 172283 CAAAGTCTTGACAAAGATTTGCAT 172260 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || ||||| ||||| |||||| | || | ||||| | ||| || || Sbjct 172684 GTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTTCCG 172625 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||||||||| || || ||||||||||| |||||| ||| Sbjct 172624 GCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTA 172565 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| | ||||| || |||| || | ||||| ||||| | || Sbjct 172564 ACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTC 172505 Query 139748 TTTACGAATATTTGCAT 139764 |||||||| || ||||| Sbjct 172504 TTTACGAAAATCTGCAT 172488 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| ||||||||||| || || || || | ||||| | ||| Sbjct 172918 TGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGC 172859 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| ||||| || ||||| || || || ||||| ||||| ||| || Sbjct 172858 TTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGGATCTTA 172799 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | || || | ||||| || |||| || | ||||| ||||| Sbjct 172798 GCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTA 172739 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || |||||||| || ||||| Sbjct 172738 AGTGTCTTTACGAAAATCTGCAT 172716 >seq89 Length=276290 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| ||| | ||||| || | |||| |||||||||||||||||||| | Sbjct 106379 GCCACCTCGACGACGAAGTACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATC--T 106322 Query 139597 CATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | ||| ||| ||||| | ||| |||||||| | || || | || ||||| || Sbjct 106321 GAGAGTGTACGACCATCTTCCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGT 106262 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || |||||||| || || ||| ||| | | |||| || || | || || Sbjct 106261 GGGATTCCTTCTTTATCCTGTATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCA 106202 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| || | || || || |||| |||||||| ||||||||||| Sbjct 106201 ACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495980921681600