Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq78 89.7 4e-13 seq89 84.2 2e-11 >seq78 Length=312069 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||||||||| | ||||| | || ||||| || || |||||||| Sbjct 172678 TCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTTCCGGCAAAG 172619 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | ||||| ||||||| || | |||||||| || ||| |||| || | Sbjct 172618 ATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTAACATTT 172559 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| || ||| || || | || || || |||||||| || || || || Sbjct 172558 TCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACG 172499 Query 43099 AAAATTTGCATT 43110 ||||| |||||| Sbjct 172498 AAAATCTGCATT 172487 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| || ||||| ||||| | || ||||| || || || ||||| Sbjct 172907 CTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGCTTTCCAGCAAA 172848 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | ||||||||||| | || | ||||| || || |||| | ||||| | Sbjct 172847 GATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 172788 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || || ||| || || | || || || |||||||| || || || || Sbjct 172787 CTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTAC 172728 Query 43098 AAAAATTTGCATT 43110 ||||| |||||| Sbjct 172727 GAAAATCTGCATT 172715 >seq89 Length=276290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | ||| || || ||||| | || ||||| || | |||||| | | ||| Sbjct 106132 ACTAAATGTAAAGTACTTTCATTTTGAATGTTATAATCTGAGAGTGTACGACCATTTTCC 106073 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || |||| |||| || ||||||||| | || | |||||||| || ||| Sbjct 106072 AATTGTTTACCAACAAATATCAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTGTC-CTG 106014 Query 43021 -ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTC 43064 || |||||| || || |||| || || | |||||| || || Sbjct 106013 TATTTTCTCTTTCACACTTTCAACGGTATCACTAGCCTCAACTTC 105969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381307326873084