Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq78 131 2e-25 seq89 104 2e-17 >seq78 Length=312069 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||||| |||||| |||||||| ||||||||||| || |||| ||||| Sbjct 172469 AACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTC 172410 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || || || |||||| |||| ||||| ||||||||||| || || ||||| ||||| Sbjct 172409 AAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTG 172350 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || ||||| | ||| | || || | || || ||||||| ||| | ||||| Sbjct 172349 AATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTT 172290 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || || || || |||||||| Sbjct 172289 TCCGGTCAAAGTCTTGACAAAGATTTGCAT 172260 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | ||||||||| ||||| |||||||||||| | || | ||||| Sbjct 172697 AACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTC 172638 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | || || || ||| |||| ||||| ||||||||||| || || ||||||||||| Sbjct 172637 CAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTG 172578 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||| ||| | | ||| | ||||| | || || ||||||| ||| | ||||| Sbjct 172577 GATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTT 172518 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | ||| |||||||| || ||||| Sbjct 172517 TCCGGTAAGTGTCTTTACGAAAATCTGCAT 172488 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | || | ||| | ||| | ||| |||||||| || ||||||||||| | Sbjct 172258 CCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGAC 172199 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || || ||| |||| ||||| ||||| ||||| || Sbjct 172198 AAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGG 172139 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | || || ||| Sbjct 172138 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAACT 172079 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||| | ||| || ||||| |||||||| Sbjct 172078 TCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 172032 >seq89 Length=276290 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| ||| | |||||||| | ||| ||||||||| ||||| ||||| | Sbjct 106379 GCCACCTCGACGACGAAGTACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATC--T 106322 Query 143017 CATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | ||| ||| ||||| | |||| |||||||| | || || | || ||||| || Sbjct 106321 GAGAGTGTACGACCATCTTCCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGT 106262 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || |||||||| || || ||| ||| | | |||| || || | ||||| Sbjct 106261 GGGATTCCTTCTTTATCCTGTATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCA 106202 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| ||| | || || || |||| |||||||| ||||||||||| Sbjct 106201 ACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 142963 TCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGT 143022 ||| |||| | |||||||| | |||| ||| ||||| ||||| ||||| | | || Sbjct 106601 TCGAAAACAAAGTACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATC--TGAGAGT 106544 Query 143023 GCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG 143080 | ||| ||||| | | |||||||||| | || || | || ||||| || || || Sbjct 106543 GTACGACCATCTTCCAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATT 106484 Query 143081 CCTTCTTTGTCG-GTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTACTT 143138 |||||||| || ||| | |||| |||| | | || | || || | ||||| |||| Sbjct 106483 CCTTCTTTATCCTGTA--TCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTT 106426 Query 143139 CAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| ||| | || || || |||| |||||||| ||||||||||| Sbjct 106425 CAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506929487763360