Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq78 113 3e-20 seq89 100 2e-16 seq85 86.0 5e-12 >seq78 Length=312069 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || |||||||| ||||||||||| | | | | | ||||| Sbjct 172469 AACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTC 172410 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || |||||||| | || | ||| || || ||| |||||||||||| ||||| Sbjct 172409 AAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTG 172350 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||||| |||| ||||||||| | || || || | |||||||| || Sbjct 172349 AATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTT 172290 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || ||||| |||||||| Sbjct 172289 TCCGGTCAAAGTCTTGACAAAGATTTGCAT 172260 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || || || || ||||| |||||||||||| ||| | | | ||||| Sbjct 172697 AACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTC 172638 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || || || | || | ||| || || ||| ||| |||||||||||||| Sbjct 172637 CAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTG 172578 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||||| ||| || ||| |||| || || || | || || || | || ||||| | Sbjct 172577 GATTTTAGCT-TTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCT 172519 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || || ||||| ||||| ||||| Sbjct 172518 TTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172488 >seq89 Length=276290 Score = 100 bits (110), Expect = 2e-16 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 |||||||| | || |||||||| ||||| ||||| | ||| | || | |||| Sbjct 106360 ACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATC--TGAGAGTGTACGACCATCTT 106303 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | |||||| | ||||| |||| | | ||||| || ||| ||||||||||| || Sbjct 106302 CCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCT 106243 Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || |||||| || | | | || || ||||| | ||| || || | ||||| ||| Sbjct 106242 GTATCTTTGCT-TTAATATTCTCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTT 106184 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||||||||||||||| |||||||| Sbjct 106183 TTACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 |||||||| | || || ||||| ||||| ||||| | ||| | || | |||| Sbjct 106588 ACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATC--TGAGAGTGTACGACCATCTT 106531 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | ||| ||| ||||| |||| | | ||||| || ||| ||||||||||| || Sbjct 106530 CCAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCT 106471 Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || |||||| || ||| | || || ||||| | ||| || || | ||||| ||| Sbjct 106470 GTATCTTTGCT-TTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTT 106412 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||||||||||||||| |||||||| Sbjct 106411 TTACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 >seq85 Length=280044 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||| || ||||| ||||| || ||| | || || || ||||| ||||| | | Sbjct 114614 CTTTCTGGATGTTATAATCAGAGAGGGTTCGACCATCCTCCAACTGTTTACCAGCAAAGA 114555 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 | | || || ||||| || || ||||| ||||| || ||| ||||||| ||| Sbjct 114554 TGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 114495 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 |||||||||| | || || |||| || ||||| || || || ||||| || |||| Sbjct 114494 CTATGGTATCAGAAGGCTCGACCTCTAGCGTGATGGTCTTCCCAGTGAGAGTCTTGACAA 114435 Query 15354 AAATTTGCATATTTGAA 15370 |||| ||||| ||| || Sbjct 114434 AAATCTGCATCTTTAAA 114418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362120060437518