Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq78 98.7 6e-16 >seq78 Length=312069 Score = 98.7 bits (108), Expect = 6e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||| ||||||||||| || ||||||||||||||| || | || || | || Sbjct 172463 ATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTCAAGCTG 172404 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| ||| || | ||| ||||| || | || || ||||| || || |||| Sbjct 172403 CTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTGAATCTT 172344 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 |||||| ||| ||| || ||| || | ||| || ||||| || || ||||| || Sbjct 172343 GGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTTTCCGGT 172284 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | ||| || || || |||||||| Sbjct 172283 CAAAGTCTTGACAAAGATTTGCAT 172260 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | || | ||| | ||| || ||||| || || |||||||||||| Sbjct 172258 CCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGAC 172199 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| || | || || | |||||||| ||| || | ||| |||||||| | || Sbjct 172198 AAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGG 172139 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || | | | ||| || || | | ||| ||||| || | | Sbjct 172138 ATTCCTTCCTTGTCCTGGATCTTAGCC---TTGACGTTCTCAATAGTGTCAGAAGGCTCA 172082 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || ||||| ||||| || || ||||| |||||||| Sbjct 172081 ACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 172032 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||| || || ||||| || |||||||| || | | | | || ||||| || Sbjct 172691 ATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTG 172632 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAAT 33282 |||||| ||| || | ||| ||||| || | || || |||||||| || | | | Sbjct 172631 CTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTT 172572 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 || ||| || ||| ||| ||||| || | ||| || ||||| || || ||||| Sbjct 172571 AGC---TTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCC 172515 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || ||||||||||| ||||| Sbjct 172514 GGTAAGTGTCTTTACGAAAATCTGCAT 172488 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||| ||||| ||||| || ||||| ||||||||| | | || ||||| || Sbjct 172919 ATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTG 172860 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC-- 33283 ||||||| ||| || | ||| || || || | || || ||||| || || ||| Sbjct 172859 CTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGGATCTT 172800 Query 33284 -GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 |||| | || | | ||| || || || | ||| || ||||| || || ||||| Sbjct 172799 AGCCT---TGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCC 172743 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || ||||||||||| ||||| Sbjct 172742 GGTAAGTGTCTTTACGAAAATCTGCAT 172716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318725547403404