Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq89 104 2e-17 >seq89 Length=276290 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||| | ||| || ||||||||||| |||||||| | | ||| |||| ||| Sbjct 106360 ACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCC 106301 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||| | || |||||||| | | || || || | || | ||||||||||| Sbjct 106300 AATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGT 106241 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| ||| | | | | |||||| | || || || || | |||||||||||| Sbjct 106240 ATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTA 106181 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | ||| || ||||||||||||||| Sbjct 106180 CCAGTCAGAGTTTTTACAAATATTTGCATG 106151 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||||| || || || |||||||| |||||||| | | ||| |||| ||| Sbjct 106588 ACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCC 106529 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||| ||| || |||||||| | | || || || | || | ||||||||||| Sbjct 106528 AATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGT 106469 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| ||| || | ||| |||||| | || || || || | |||||||||||| Sbjct 106468 ATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTA 106409 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | ||| || ||||||||||||||| Sbjct 106408 CCAGTCAGAGTTTTTACAAATATTTGCATG 106379 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 43935 TTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCA 43994 ||| ||| |||||||| | | ||| ||||| ||||| ||| || |||||||| | Sbjct 107991 TTTTAATGTTATAATCTGAGAGTGTACGATCATCTACCAATACTTTACCAGCAAATATGA 107932 Query 43995 ACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAA 44054 | || || || | || | ||||||||||| || ||| ||| || | ||| Sbjct 107931 GTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAACATTCTCAA 107872 Query 44055 CAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATA 44114 |||||| | || || || || | ||||||||| |||| || | ||| || ||||||| Sbjct 107871 TAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTCTACCAGTCAGAGTTTTTACAAATA 107812 Query 44115 TTTGCATG 44122 |||||||| Sbjct 107811 TTTGCATG 107804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354719669030904