Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq78 104 2e-17 seq89 91.5 1e-13 >seq78 Length=312069 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| |||||||| |||||||| ||||||||||| || ||| |||||| | || Sbjct 172463 ATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTCAAGCTG 172404 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||||| ||| | ||||| | ||| |||||| || | ||||| ||||| ||| || Sbjct 172403 CTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTGAATCTT 172344 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||| || | ||| | |||| ||| || ||| | |||||||| || ||||| Sbjct 172343 GGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTTTCCGGT 172284 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 ||| || |||||||| ||||||||| Sbjct 172283 CAAAGTCTTGACAAAGATTTGCATT 172259 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| ||||||||||| ||||| |||||||||||| | ||| ||||||||| || Sbjct 172691 ATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTG 172632 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 || || ||| | ||||| | ||| |||||| || | ||||||||||| ||||| Sbjct 172631 CTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTT 172572 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||| || | ||| || || ||| || ||| | || ||||| || ||||| Sbjct 172571 AGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGT 172512 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 | || || || ||||| |||||| Sbjct 172511 AAGTGTCTTTACGAAAATCTGCATT 172487 >seq89 Length=276290 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 || ||||||| |||| ||| ||||| ||||| ||||| | ||| | || ||||| Sbjct 106588 ACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTG--AGAGTGTACGACCATCTT 106531 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 ||||| ||| || ||| | || || ||||||||||| || | |||||||| || Sbjct 106530 CCAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCT 106471 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 || ||| ||| || | ||| || ||| |||||| ||| | ||||| |||| Sbjct 106470 GTATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTT 106411 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || |||| ||||| ||||| |||||||| Sbjct 106410 TACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 || ||||| | ||| ||||||||| ||||| ||||| | ||| | || ||||| Sbjct 106360 ACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTG--AGAGTGTACGACCATCTT 106303 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 |||||||| | || ||| | || || ||||||||||| || | |||||||| || Sbjct 106302 CCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCT 106243 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 || ||| ||| | | | | || ||| |||||| ||| | ||||| |||| Sbjct 106242 GTATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTT 106183 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || |||| ||||| ||||| |||||||| Sbjct 106182 TACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419518686392838