Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq78 116 3e-21 >seq78 Length=312069 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 |||||||||||||| | ||| |||||| | ||| | ||| |||| ||| |||||| Sbjct 172684 GTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTTCCG 172625 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | |||||||| || || || ||||||||||| | ||||| || || Sbjct 172624 GCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTA 172565 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | |||||||| | || || |||| |||||||| ||||| ||||| || Sbjct 172564 ACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTC 172505 Query 94991 TTCACAAAGATCTGCAT 95007 || || || |||||||| Sbjct 172504 TTTACGAAAATCTGCAT 172488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448216122431280