Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq16 201 2e-47 seq3208 159 5e-35 >seq16 Length=628612 Score = 201 bits (222), Expect = 2e-47 Identities = 211/275 (77%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | |||| ||||| || |||||||| |||||||||||||| || | Sbjct 264736 CGCCAAGCGTCACAGGAAGATC-CTTCGTGACAACATCCAGGGAATCACCAAGCCCGCCA 264678 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||||| ||||| |||||||| ||||||||| ||||||| | ||||||| |||| Sbjct 264677 TTCGTCGTCTTGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGGCCTCATCTATGAGGAGA 264618 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| |||||||| ||| || |||| ||||||| || || || | Sbjct 264617 CACGAGGTGTACTGAAGGTCTTCCTCGAGAATGTCATCCGTGATGCTGTCACTTACACAG 264558 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || || | ||||| ||||| | |||||| |||||||||| |||| | |||| Sbjct 264557 AGCATGCCAAGAGAAAGACAGTCACTGCTATGGATGTCGTCTATGCTCTGAAGAGGCAAG 264498 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | |||| | |||||||| ||| | ||| | ||| Sbjct 264497 GACGTACACTCTATGGTTTCGGAGGGTAAACATCT 264463 >seq3208 Length=6078 Score = 159 bits (176), Expect = 5e-35 Identities = 198/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | ||| || |||||||||||||| || |||||||||||||| Sbjct 3497 GCCAAGCGTCACAGGAAAGTTCTCCGTGATAACATCCAAGGTATTACCAAGCCAGCTATT 3438 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| ||||| || ||||| ||||| ||| |||| || | |||| ||||| | Sbjct 3437 AGACGTCTAGCTCGACGAGGTGGTGTCAAACGTATCTCCGGCCTTATCTACGAAGAAACC 3378 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||| ||||| | | | ||| || | |||||| || ||| || || Sbjct 3377 AGAGGTGTATTGAAAGTCTTCTTAGAAAACGTCATTCGAGATGCTGTCACCTACACTGAA 3318 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| |||||||||| ||||| | |||||| Sbjct 3317 CATGCCAAGAGGAAGACCGTCACTGCCATGGATGTCGTCTATGCTTTGAAGAGACAAGGC 3258 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || || ||| ||||| ||| Sbjct 3257 CGAACCCTCTACGGATTCGGAGGTTAAGCTT 3227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79062950114814