Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq97 111 2e-19 seq576 82.4 1e-10 >seq97 Length=262405 Score = 111 bits (122), Expect = 2e-19 Identities = 214/316 (68%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || || ||||| ||||| | ||||| || ||||| ||| |||| |||| |||||| | Sbjct 93739 TTATTCCCTCCTTGATCAACATATCTTGCTGTGTTGTTAAAAACCCTCAGCATTGGTACC 93680 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 | || || || | |||||||| || | ||||| || ||| | || || || | Sbjct 93679 AGGCCATTAGAAGTGCCATTGGTGCCAGCAATATAACTACCAGACGATCGTATCTTGTGA 93620 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 | | |||||| || ||||| || | || || || || |||| || || || ||| Sbjct 93619 ACAGCTAGACCAATACCCCCGGCACTCTTTGATATATTGGCACATCTCTTCAAGGTATCA 93560 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 || |||||||||||| || ||| ||| | || || |||||| || | || || Sbjct 93559 TATATACCCTCTATGGAGTCGTCGGCCATTGTGAGGAGGAAACAGGAGGAGAGCTGAGGA 93500 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 63665 |||| ||| || | ||| || || || || ||||| || || ||||| ||||| | Sbjct 93499 CGACAAGTACCAGAATTGAACAATGTCGGTGAAGCATGAGTGAACCAACGCTCAGACATC 93440 Query 63666 AGATTGTACGTCTCAA 63681 || || || |||| || Sbjct 93439 AGGTTATAGGTCTAAA 93424 >seq576 Length=57293 Score = 82.4 bits (90), Expect = 1e-10 Identities = 115/158 (73%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 32951 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAA---TGATTA-TCTTCTTGAGACATAACT 33006 ||| ||||||||| || | ||||||| || || | | ||||||| | ||| ||| Sbjct 19894 TGTCTCTTTAAAACTCTGCCTCTAAAGTGAAGACGTGCTCAGTCTTCTT-ACTCATGACT 19836 Query 33007 CCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGAT 33066 || || || || ||||| || | || || || |||||||| ||||| |||| || Sbjct 19835 CCTGACTTCTGATAATCACCGACCCTCTTCTCAAAGAAATTAGTCTTTCCCTCCAGAGAG 19776 Query 33067 ATATTTTCCATGAAATCAAACGGATTGGTAACATTATA 33104 ||||| |||||||||||||| ||||| | ||||| || Sbjct 19775 ATATTCTCCATGAAATCAAAAGGATTACTGACATTGTA 19738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622842871917680