Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq78 102 7e-17 seq89 98.7 9e-16 >seq78 Length=312069 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 23979 TAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAA 24038 |||||| | || |||||| | || || |||||| | || ||||| | || ||| | ||| Sbjct 171792 TAGCCACAAAAGATGCAAATCTTCGTGAAAACACTTACCGGAAAGACCATCACCCTTGAA 171851 Query 24039 GTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATA 24098 || ||| | ||||| |||||| | ||||| ||||| ||||| ||||| || Sbjct 171852 GTTGAGCCTTCTGACACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATC 171911 Query 24099 CCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTC 24158 || || || || ||| | || || | || ||||||||||| ||||||| | | | | Sbjct 171912 CCACCTGACCAGCAGCGTCTTATCTTCGCTGGCAAGCAACTTGAAGATGGCCGTACTCTT 171971 Query 24159 AGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||| || |||||||| || || ||||| ||||| Sbjct 171972 TCCGACTACAACATTCAGAAGGAGTCTACCCTTCAT 172007 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || ||||| ||| | || ||||| | || || | ||||| ||| | Sbjct 172487 AATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172546 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || ||| || || ||||||||||| || || |||||||| Sbjct 172547 TGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCCGATCA 172606 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | ||| ||||| | ||||||| | | | | |||||| || Sbjct 172607 GCAGCGTCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAA 172666 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||| ||||| ||||||||| | ||| Sbjct 172667 CATCCAAAAGGAATCTACACTCCAT 172691 >seq89 Length=276290 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| | ||||| ||| | ||||| | ||||| || | Sbjct 106152 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106211 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | | ||| |||||| || |||||||| || || || |||||| Sbjct 106212 GATACTATGGAGAATATTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 106271 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || | ||| | ||||||| | | || ||||||||| Sbjct 106272 CAGAGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCGTACACTCTCAGATTATAAC 106331 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||| ||| | |||||||| Sbjct 106332 ATTCAAAAAGAAAGTACGTTGCATTTAGT 106360 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| | ||||| ||| | ||||| | ||||| || | Sbjct 106380 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106439 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| |||||| || |||||||| || || || |||||| Sbjct 106440 GATACTATTGAGAATGTTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 106499 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || || | | ||||||| | | || ||||||||| Sbjct 106500 CAGAGACTCATATTTGCTGGTAAAATATTGGAAGATGGTCGTACACTCTCAGATTATAAC 106559 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| ||| |||| | |||||||| Sbjct 106560 ATTCAAAAGGAAAGTACATTACATTTAGT 106588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429865796556690