Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq78 91.5 1e-13 seq89 82.4 6e-11 >seq78 Length=312069 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| |||||||| || | || ||||| |||||||| | ||| ||| | Sbjct 172259 AATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTTGAAGTTGAGCCTTC 172318 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| || ||| | | |||||| || ||| || || ||||| | || ||||| Sbjct 172319 CGATACCATTGAAAACGTAAAAGCCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCA 172378 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||| | ||| ||||| || | ||||||| | || || | ||||| || Sbjct 172379 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAA 172438 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| |||||||||||||| Sbjct 172439 CATCCAAAAAGAGTCTAC 172456 >seq89 Length=276290 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || || || ||||| ||||| | ||| || | Sbjct 106152 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106211 Query 115346 GACACTGTTG-GACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| | | || | |||| |||| | | ||||||||||| |||| |||||| Sbjct 106212 GATACTATGGAGAATATTAAAGCAAAGA-TACAGGATAAAGAAGGAATCCCACCTGATCA 106270 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || ||||| || | ||| || | |||||| ||||||| || | | |||||||| Sbjct 106271 ACAGAGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCGTACACTCTCAGATTATAA 106330 Query 115465 CATTCAAAAAGA 115476 |||||||||||| Sbjct 106331 CATTCAAAAAGA 106342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425274546375760