Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq78 113 4e-20 >seq78 Length=312069 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | ||| |||||||| ||||||||||| ||| | || || Sbjct 172018 CGGAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCA 171959 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || |||||||| ||| |||| | |||||||||||| || ||||||||||| ||| Sbjct 171958 TCTTCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTG 171899 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || | | ||| | || | ||| | | Sbjct 171898 TCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTGATG 171839 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| || ||||| ||||| || ||||| Sbjct 171838 GTCTTTCCGGTAAGTGTTTTCACGAAGATTTGCAT 171804 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || || || || | ||| | || |||||||||||||||||||| || | Sbjct 172942 CCACCCCTCAGGCGGAGAACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGAC 172883 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||| || || |||| | |||||| || || || ||| Sbjct 172882 AAAGTACGGCCATCTTCCAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGG 172823 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | ||| | ||||| | | ||| | Sbjct 172822 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACT 172763 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || ||||||||||||||||| Sbjct 172762 TCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172716 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | || || |||||||| |||||||||||| | || || Sbjct 172702 CGGAGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCA 172643 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || | |||||| || || |||| | ||||||||| || || ||||||||||||||| Sbjct 172642 TCTTCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTG 172583 Query 131140 TCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || |||||| |||| | | | || | ||| || | | ||| | || | || | Sbjct 172582 TCTTGGATTTT-AGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGAT 172524 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || ||||| || || ||||||||||||||||| Sbjct 172523 GGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172488 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | || || || || || ||||||||||| || ||||| Sbjct 172246 CGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAAGTGCGGCCA 172187 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||| || || |||| | |||||||||||| || ||||||||||| ||| Sbjct 172186 TCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATTCCTTCCTTG 172127 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | ||| || | | ||| | || | || | | Sbjct 172126 TCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATG 172067 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| || || || ||||| || ||||| Sbjct 172066 GTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 172032 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | || ||||| ||||| ||||||||||| || ||||| Sbjct 172474 CGGAGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCA 172415 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | ||||||||| || || || |||||||| ||| Sbjct 172414 TCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTG 172355 Query 131140 TCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | || || | | || | ||||||| | ||| | || | |||| Sbjct 172354 TC-TTGAATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAAT 172296 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || ||||| | ||| || || || || ||||| Sbjct 172295 GGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 172260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471933749656320