Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq78 114 9e-21 seq89 113 3e-20 >seq78 Length=312069 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| |||| || | || | |||||| || |||||||||||| ||||| ||||| Sbjct 172943 ACCACCCCTCAGGCGGAGAACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGA 172884 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| ||| | || || || || ||||| ||||| || || || |||||||| | || Sbjct 172883 CAAAGTACGGCCATCTTCCAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGG 172824 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| |||||| || || ||| ||||||| | ||||| | ||||| Sbjct 172823 GATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAAC 172764 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | || || || || || || | || || ||||| |||||||| Sbjct 172763 TTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172716 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 |||||||| || |||||||| || | | ||| | || || || || ||||||||||| Sbjct 172678 TCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTTCCGGCAAAG 172619 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || ||||||| |||| ||||||||||| ||||| || ||||| Sbjct 172618 ATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTAACATTT 172559 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||| || | |||||||| | || || || || || || | || || ||| Sbjct 172558 TCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACG 172499 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 172498 AAAATCTGCAT 172488 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | || | || | ||| || ||| || || || || ||||||| Sbjct 172262 CATT-CCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAAT 172204 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||||| || | || || | || ||||||||||| || || || || || |||| Sbjct 172203 CAGACAAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGG 172144 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| |||||| || || ||| || |||| | ||| || | | Sbjct 172143 GTGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCT 172084 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || || || || || | || |||||||| || ||||| Sbjct 172083 CAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 172032 >seq89 Length=276290 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || ||||| | || || ||||||||||| || ||||| || | ||| | || || Sbjct 106588 ACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCC 106529 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||| ||| || |||||||| || | |||||||| | |||| |||||||| ||| Sbjct 106528 AATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGT 106469 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| || ||||||| | |||||| | ||||||||| | ||||| |||||| Sbjct 106468 ATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTA 106409 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || |||| ||||| || ||||| |||||| Sbjct 106408 CCAGTCAGAGTTTTTACAAATATTTGCATG 106379 Score = 89.7 bits (98), Expect = 3e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | || ||||| | ||| || || |||||||| || ||||| || Sbjct 106150 CCACCTCTAAGACGAAGTACTAAATGTAAAGTACTTTCATTTTGAATGTTATAATCTGAG 106091 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | | || |||||||| || ||||||| || | |||||||| | ||| Sbjct 106090 AGTGTACGACCATTTTCCAATTGTTTACCAACAAATATCAGTCTCTGTTGATCAGGTGGG 106031 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| ||||| | |||||| | | || ||||| | | |||||| Sbjct 106030 ATTCCTTCTTTGTCCTGTATTTTCTCTTTCACACTTTCAACGGTATCACTAGCCTCAACT 105971 Query 38271 TC 38272 || Sbjct 105970 TC 105969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334892507099738