Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq78 149 5e-31 seq89 134 1e-26 >seq78 Length=312069 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | ||||| || ||||||| | ||||| ||| | || Sbjct 172031 AATGCAAATCTTCGTGAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172090 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||| ||| | ||| || ||| ||||| ||||| || ||||| ||||| Sbjct 172091 TGACACTATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCA 172150 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| |||||||| || || | ||||||| |||||| || |||||||| Sbjct 172151 GCAGCGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAA 172210 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||||||||| || ||| | || || | || |||||||||| Sbjct 172211 CATCCAGAAAGAATCCACACTCCATCTTGTTCTCCGCCTCAGAGGAGGAA 172260 Score = 138 bits (152), Expect = 1e-27 Identities = 172/233 (74%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || |||||||| | ||||| || ||||||| | ||||| ||| | || Sbjct 172487 AATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172546 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||| || | || |||| |||| || ||||||||||| || ||||| || Sbjct 172547 TGACACTATTGAA--AATGTTAAAGCTAAAATCCAA-GACAAAGAAGGAATCCCACCCGA 172603 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| |||| |||||||| || || || ||||||| || ||| | |||||| Sbjct 172604 TCAGCAGCGTCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTA 172663 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || ||||| ||||| || || ||| | || || | || || ||||||| Sbjct 172664 CAACATCCAAAAGGAATCTACACTCCATCTTGTTCTCCGCCTCAGGGGAGGAA 172716 Score = 136 bits (150), Expect = 3e-27 Identities = 172/234 (74%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||||||||||| || |||| || | ||||| ||| | || Sbjct 172259 AATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTTGAAGTTGAGCCTTC 172318 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || || | |||| || | ||| ||||| ||||| |||||||| | Sbjct 172319 CGATACCATTGAAAACGTAA---AAGCCAAGATTCA-AGACAAGGAAGGAATTCCACCCG 172374 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| |||| ||||| ||||| || | ||||||| |||||| || |||| Sbjct 172375 ATCAGCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATT 172434 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| || |||||||| || || || ||| | || || | || || ||||||| Sbjct 172435 ACAACATCCAAAAAGAGTCTACACTTCATCTTGTTCTCCGCCTCAGGGGAGGAA 172488 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| || ||||||| | ||||| ||| | ||| Sbjct 171804 ATGCAAATCTTCGTGAAAACACTTACCGGAAAGACCATCACCCTTGAAGTTGAGCCTTCT 171863 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| || ||||||||||| Sbjct 171864 GACACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAG 171923 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || || ||||| ||| | ||||||| || ||| | ||| ||||| Sbjct 171924 CAGCGTCTTATCTTCGCTGGCAAGCAACTTGAAGATGGCCGTACTCTTTCCGACTACAAC 171983 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || || || || ||| | || || | || || ||||||| Sbjct 171984 ATTCAGAAGGAGTCTACCCTTCATCTTGTTCTCCGCCTCAGGGGAGGAA 172032 >seq89 Length=276290 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||||||||| ||| |||| |||||| | || || | ||||| || | ||| Sbjct 106152 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106211 Query 25059 GACACTATCGAGTC-ACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| ||| | | ||||||| | || || |||||||| || |||||||| || Sbjct 106212 GATACTATGGAGAATATTAAAGCAAAGATACAG-GATAAAGAAGGAATCCCACCTGATCA 106270 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || ||||| || | |||||| ||||||| ||| || | ||||| || Sbjct 106271 ACAGAGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCGTACACTCTCAGATTATAA 106330 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||| ||| | |||||||| || Sbjct 106331 CATTCAAAAAGAAAGTACGTTGCATTTAGTACT 106363 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||||||||| ||| |||| |||||| | || || | ||||| || | ||| Sbjct 106380 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106439 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||| | || ||||||| | || || |||||||| || |||||||| Sbjct 106440 GATACTATTGAG--AATGTTAAAGCAAAGATACA-GGATAAAGAAGGAATCCCACCTGAT 106496 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || ||| ||| ||||||| ||| || | ||||| Sbjct 106497 CAACAGAGACTCATATTTGCTGGTAAAATATTGGAAGATGGTCGTACACTCTCAGATTAT 106556 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| ||| || |||||||||| || Sbjct 106557 AACATTCAAAAGGAAAGTACATTACATTTAGTACT 106591 Score = 100 bits (110), Expect = 2e-16 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||||||||| ||| |||| |||| | | || || | ||||| || | ||| Sbjct 107805 ATGCAAATATTTGTAAAAACTCTGACTGGTAGAACAATTACTCTTGAAGTTGAACCTTCT 107864 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||| | || ||||||| | || || |||||||| || |||||||| Sbjct 107865 GATACTATTGAG--AATGTTAAAGCAAAGATACA-GGATAAAGAAGGAATCCCACCTGAT 107921 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || ||| ||| | ||||||||| || | ||||| Sbjct 107922 CAACAGAGACTCATATTTGCTGGTAAAGTATTGGTAGATGATCGTACACTCTCAGATTAT 107981 Query 25176 AATATTCAAA 25185 || ||| ||| Sbjct 107982 AACATTAAAA 107991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| || |||||||| |||||| | | || |||| || |||||||| ||| Sbjct 106017 GACAAAGAAGGAATCCCACCTGATCAACAGAGACTGATATTTGTTGGTAAACAATTGGAA 106076 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||| ||| || | ||||| || |||||||| ||| || |||||||||| || Sbjct 106077 AATGGTCGTACACTCTCAGATTATAACATTCAAAATGAAAGTACTTTACATTTAGTACTT 106136 Query 25212 AGGCTAAGAGGAGG 25225 | || ||||| || Sbjct 106137 CGTCTTAGAGGTGG 106150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433257242683370