Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq78 158 1e-33 seq89 138 9e-28 seq460 86.0 5e-12 seq431 86.0 5e-12 >seq78 Length=312069 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| ||||| || || | ||||||||||| || | || Sbjct 172260 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTTGAAGTTGAGCCTTCC 172319 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| || |||||||||||||| || |||||||||||||| Sbjct 172320 GATACCATTGAAAACGTAAAAGCCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCAG 172379 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 172380 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAAC 172439 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || |||||||| || || | ||| | ||| Sbjct 172440 ATCCAAAAAGAGTCTACACTTCATCTTGTT 172469 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || ||||||||||||| || | | Sbjct 172488 ATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCT 172547 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||| |||||||| || || || ||||||||||| Sbjct 172548 GACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCCGATCAG 172607 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| |||||||| || ||||| || ||| ||| || | |||||||||||| Sbjct 172608 CAGCGTCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAAC 172667 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||| ||||| || | ||| | ||| Sbjct 172668 ATCCAAAAGGAATCTACACTCCATCTTGTT 172697 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || ||||||||||||| || | | Sbjct 172716 ATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCT 172775 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || || |||||||| || || ||||| |||||| Sbjct 172776 GATACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCTGATCAA 172835 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||||| || ||| ||| || | || || |||||| Sbjct 172836 CAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACAAC 172895 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 |||||||| || || || | ||| | ||| | || || | || ||||| Sbjct 172896 ATTCAAAAGGAGTCTACACTTCATCTTGTTCTCCGCCTGAGGGGTGGTTT 172945 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || ||||||||||||| || | | Sbjct 172032 ATGCAAATCTTCGTGAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCT 172091 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || |||||||| || || |||||||| || Sbjct 172092 GACACTATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAG 172151 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| |||||||| || ||| | || ||| |||||| | || ||||||||| Sbjct 172152 CAGCGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAAC 172211 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || ||||||||||| | ||| | ||| Sbjct 172212 ATCCAGAAAGAATCCACACTCCATCTTGTT 172241 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 |||||||||||| || || ||||| | ||||| || || |||| |||||||| || | Sbjct 171800 AAAGATGCAAATCTTCGTGAAAACACTTACCGGAAAGACCATCACCCTTGAAGTTGAGCC 171859 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || | |||| || || ||||||||||| || || ||||| || Sbjct 171860 TTCTGACACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGA 171919 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || |||||||| || || ||||| || | || ||| ||| || | ||||| || Sbjct 171920 CCAGCAGCGTCTTATCTTCGCTGGCAAGCAACTTGAAGATGGCCGTACTCTTTCCGACTA 171979 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||||||| || || || ||| | ||| | ||| Sbjct 171980 CAACATTCAGAAGGAGTCTACCCTTCATCTTGTT 172013 >seq89 Length=276290 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || |||||||| | ||||||||||| ||| | | Sbjct 106152 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106211 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| |||| |||| ||| ||| || || || || || || || ||||| |||||| Sbjct 106212 GATACTATGGAGAATATTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 106271 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || |||||||| || | ||| || || ||| || || |||| ||||| ||| Sbjct 106272 CAGAGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCGTACACTCTCAGATTATAAC 106331 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||||||| || | |||||||| Sbjct 106332 ATTCAAAAAGAAAGTACGTTGCATTTAGT 106360 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || |||||||| | ||||||||||| ||| | | Sbjct 106380 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106439 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||| || || || || || || || ||||| |||||| Sbjct 106440 GATACTATTGAGAATGTTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 106499 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || |||||||| || ||| || || ||| || || |||| ||||| ||| Sbjct 106500 CAGAGACTCATATTTGCTGGTAAAATATTGGAAGATGGTCGTACACTCTCAGATTATAAC 106559 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| ||| || |||||||||| Sbjct 106560 ATTCAAAAGGAAAGTACATTACATTTAGT 106588 Score = 105 bits (116), Expect = 6e-18 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || |||| ||| | ||||||||||| ||| | | Sbjct 107805 ATGCAAATATTTGTAAAAACTCTGACTGGTAGAACAATTACTCTTGAAGTTGAACCTTCT 107864 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||| || || || || || || || ||||| |||||| Sbjct 107865 GATACTATTGAGAATGTTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 107924 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || |||||||| || ||| || | ||| | || || |||| ||||| ||| Sbjct 107925 CAGAGACTCATATTTGCTGGTAAAGTATTGGTAGATGATCGTACACTCTCAGATTATAAC 107984 Query 22399 ATTCAA--AAAGAATCCACCATACATTTA 22425 ||| || |||| || || ||| ||||| Sbjct 107985 ATTAAAACAAAGGAT--ACAATAGATTTA 108011 Score = 98.7 bits (108), Expect = 8e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318 |||||||||| || | | |||||||| || | | ||| | ||||| || ||||| | Sbjct 105964 CTCTTGAAGTTGAGGCTAGTGATACCGTTGAAAGTGTGAAAGAGAAAATACAGGACAAAG 106023 Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378 | || || ||||| |||||||| | || ||||||| || ||||| || || || | Sbjct 106024 AAGGAATCCCACCTGATCAACAGAGACTGATATTTGTTGGTAAACAATTGGAAAATGGTC 106083 Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 | || |||| ||||| ||||||||||| ||| || |||||||||| Sbjct 106084 GTACACTCTCAGATTATAACATTCAAAATGAAAGTACTTTACATTTAGT 106132 >seq460 Length=79726 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 22224 AATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATAC 22283 ||| ||| | |||||| | || |||||||| | ||||||||||| ||| ||| |||| Sbjct 3007 AATATTTTTAAAAACTCTGACTGGTAAAACCATTACTCTTGAAGTTGAACGCACTGATAG 2948 Query 22284 CGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACG 22343 | || || | || ||| || || || || || || |||||||| ||||||| | Sbjct 2947 TATTGAGAATGTTAAGATAAAGATACAGGAGAAAGAAGGAATTCCACCTAATCAACAGAG 2888 Query 22344 TCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCA 22403 ||| |||||| || | ||| || || ||| | || |||| ||||| | ||||| Sbjct 2887 ACTTGTATTTGATGGTAGACAATTGGAAGATGGTCCTACACTCTCAGATTATAGGATTCA 2828 Query 22404 AAAAGAA 22410 ||| ||| Sbjct 2827 AAAGGAA 2821 >seq431 Length=85469 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 22226 TTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCG 22285 ||| ||| |||||| | || |||||||| | ||||||||||| | | | | ||||| Sbjct 84010 TTTATGTGAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGTATCTTCTGATACTA 84069 Query 22286 TGGACGATATCAAACAAAAAATTCAAGACAAGGAG--GGTATTCCACCCGATCAACAACG 22343 | || || | ||| | || || || | | || || || ||||| |||||||| | Sbjct 84070 TTGAGAATGTTAAAGGAGCTATACAGGATATGAAGAAGGAATCCCACCTGATCAACAGAG 84129 Query 22344 TCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCA 22403 || |||| ||| || | ||| || || ||| | || |||| ||||| || ||||| Sbjct 84130 ACTCATATATGCTGGTAGACAATTGGAAGATGGTTGTACACTCTCAGATTATAATATTCA 84189 Query 22404 AAAAGAATCCACCATACATTTAGT 22427 || ||| ||| ||||||||||| Sbjct 84190 AACGGAAAGCACAATACATTTAGT 84213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/172 (71%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 22237 ACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA---ACCACCGATACCGTGGACGAT 22293 ||| | || ||||||| | ||||||||||| ||| | | | ||||| | || || Sbjct 84254 ACTCTGACTGGTAAAAGAATTACTCTTGAAGTTGAACCTAGCTCTGATACTATTGAAAAT 84313 Query 22294 ATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTT 22353 | ||| ||| || || || | | || || ||||| |||||||| | || |||||| Sbjct 84314 GTTAAAGCAAAGATACAGGATGAAGTAGGAATCCCACCTGATCAACAGAGACTCATATTT 84373 Query 22354 GCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAA 22405 || || ||||| ||||| ||| |||| |||| ||||| |||||||||| Sbjct 84374 GCTGGTAAACAATTAGAAGATGGTTGCACACTCTCAGATTATAACATTCAAA 84425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419659463401870