Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq78 163 5e-35 seq85 140 6e-28 seq89 131 3e-25 seq431 98.7 2e-15 >seq78 Length=312069 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | ||||| | || | || || ||||| ||||| |||||||| ||||| | Sbjct 172260 TTCCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAG 172201 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | |||||||| | |||||| ||||| || || || | || |||||||||| Sbjct 172200 ACAAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTG 172141 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || ||||||||||| || ||||| ||||||||| ||| || ||||| | | || | Sbjct 172140 GGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAA 172081 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | |||||||| ||||| || || ||||| ||||| || |||||| Sbjct 172080 CTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCATT 172031 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | ||||| | || | || || || ||||| || || ||||| || |||| Sbjct 172032 TTCCTCCCCTGAGGCGGAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGG 171973 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| | ||||| || ||||| || || | || ||||| |||| Sbjct 171972 AAAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTG 171913 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||||||||| ||||| ||||||||| |||||| ||||| | | || | Sbjct 171912 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAA 171853 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||||||||| ||||| || || || || ||||| || ||||| Sbjct 171852 CTTCAAGGGTGATGGTCTTTCCGGTAAGTGTTTTCACGAAGATTTGCAT 171804 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | ||||| | || | || || || ||||||||||||||||| ||||| | Sbjct 172488 TTCCTCCCCTGAGGCGGAGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAG 172429 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | |||||||| | |||||| || || || || || | || || ||||||| Sbjct 172428 ACAAAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTG 172369 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| |||||||||||||||||||| || || ||| || ||||| || | | || | Sbjct 172368 GAATTCCTTCCTTGTCTTGAATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAA 172309 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | || ||||| ||||| || | |||||||| || || |||||| Sbjct 172308 CTTCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 172259 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | ||||| | || | || || || || || ||||||||||| ||||||| Sbjct 172716 TTCCTCCCCTGAGGCGGAGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGG 172657 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| |||||||| ||||| || || || | || || ||||||| Sbjct 172656 AAAGAGTACGGCCATCTTCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTG 172597 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || ||||| |||||||| || || || || || || || ||||| | | || | Sbjct 172596 GGATTCCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAA 172537 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | |||||||| ||||| || || ||||| ||||| ||||||||| Sbjct 172536 CTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172487 Score = 143 bits (158), Expect = 5e-29 Identities = 158/209 (76%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || ||||| ||||| ||||| || || || | || | |||||||| | Sbjct 172923 CAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCA 172864 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||||| || || || || || | ||||| || ||||| || ||||||||||| || | Sbjct 172863 ACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGGA 172804 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| |||||||| ||| ||||| || | | || ||||| | |||||||| |||| Sbjct 172803 TCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTC 172744 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || || ||||| ||||| ||||||||| Sbjct 172743 CGGTAAGTGTCTTTACGAAAATCTGCATT 172715 >seq85 Length=280044 Score = 140 bits (154), Expect = 6e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| |||||||||||||| ||||| || | ||||| || ||||| || || || || | Sbjct 114614 CTTTCTGGATGTTATAATCAGAGAGGGTTCGACCATCCTCCAACTGTTTACCAGCAAAGA 114555 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 |||||| || ||||| || || |||||||||||||| || ||||| ||||| || | Sbjct 114554 TGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 114495 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | ||||| || | | || || || | |||||||| || || ||||| |||||||| | Sbjct 114494 CTATGGTATCAGAAGGCTCGACCTCTAGCGTGATGGTCTTCCCAGTGAGAGTCTTGACAA 114435 Query 68452 ATATCTGCAT 68461 | |||||||| Sbjct 114434 AAATCTGCAT 114425 >seq89 Length=276290 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||| | || | ||| || || | ||| |||||||| ||||||||||| ||| Sbjct 106378 CCACCTCGACGACGAAGTACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTGAG 106319 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| || || | || || ||||||||||| ||||| || ||||| Sbjct 106318 AGTGTACGACCATCTTCCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGG 106259 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || || || |||||||| || | ||| || || || | | ||| ||| Sbjct 106258 ATTCCTTCTTTATCCTGTATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCAACT 106199 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || ||||| || || || || || || ||||| ||||| Sbjct 106198 TCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 123 bits (136), Expect = 5e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 || ||||| ||||||||||| |||||||| | |||||||| || || || || ||| Sbjct 106570 TCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCCAATATTTTACCAGCAAAT 106511 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 |||||||| ||||| || ||||| || ||||| || || || |||||||| || || | Sbjct 106510 ATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAACATTC 106451 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 || || || || | | ||| ||||| | || || ||||| || || || || || || Sbjct 106450 TCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACA 106391 Query 68451 AATATCTGCAT 68461 ||||| ||||| Sbjct 106390 AATATTTGCAT 106380 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 68280 ATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTT 68339 ||||||||||| |||||||| | ||||| | || || || || ||||||||||| Sbjct 107986 ATGTTATAATCTGAGAGTGTACGATCATCTACCAATACTTTACCAGCAAATATGAGTCTC 107927 Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 ||||| || ||||| || ||||| || || || |||||||| || || ||| || || Sbjct 107926 TGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAACATTCTCAATAGTA 107867 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | | ||| ||||| | || || ||| | || || || || || || ||||| ||| Sbjct 107866 TCAGAAGGTTCAACTTCAAGAGTAATTGTTCTACCAGTCAGAGTTTTTACAAATATTTGC 107807 Query 68460 AT 68461 || Sbjct 107806 AT 107805 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| || | ||| || |||| || || ||||| ||||||||||| ||| Sbjct 106150 CCACCTCTAAGACGAAGTACTAAATGTAAAGTACTTTCATTTTGAATGTTATAATCTGAG 106091 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||| ||| || || || || | ||||| ||||| ||||| || ||||| Sbjct 106090 AGTGTACGACCATTTTCCAATTGTTTACCAACAAATATCAGTCTCTGTTGATCAGGTGGG 106031 Query 68355 ATGCCTTCCTTGTCTTGAATCTT 68377 || ||||| ||||| || || || Sbjct 106030 ATTCCTTCTTTGTCCTGTATTTT 106008 >seq431 Length=85469 Score = 98.7 bits (108), Expect = 2e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 68275 TTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGA 68334 |||| ||||||||||| |||||||| | ||||||||||| || || || || ||||||| Sbjct 84425 TTTGAATGTTATAATCTGAGAGTGTGCAACCATCTTCTAATTGTTTACCAGCAAATATGA 84366 Query 68335 GTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 |||| ||||| || ||||| || ||| | | || || |||||||| || || Sbjct 84365 GTCTCTGTTGATCAGGTGGGATTCCTACTTCATCCTGTATCTTTGCTTTAAC 84314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921468051288560