Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq78 100 3e-16 seq131 82.4 8e-11 seq90 82.4 8e-11 >seq78 Length=312069 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | || | || | ||| | |||| || || || || |||||||||| | Sbjct 172258 CCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGAC 172199 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || |||||||| || || || || || ||||||||||||| ||| Sbjct 172198 AAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGG 172139 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| ||| || |||| || | | ||||| | || || Sbjct 172138 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAACT 172079 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | |||||||| || || || || ||||| || |||||||||||| Sbjct 172078 TCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCATT 172031 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | ||||| || | || || || ||||| |||||||| Sbjct 171995 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCGAA 171936 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | | |||||||| ||| || |||| | Sbjct 171935 GATAAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 171876 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | || || || | |||||||| || || || || || || || Sbjct 171875 CTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTGATGGTCTTTCCGGTAAGTGTTTTCAC 171816 Query 42197 AAAGATTTGCATTTT 42211 ||||||||||| || Sbjct 171815 GAAGATTTGCATCTT 171801 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||| || |||||||||| || ||| || | || || |||||||| ||||| || Sbjct 172451 CTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 172392 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || |||||||| |||| ||| | | |||||||| ||| | || | || ||| Sbjct 172391 GATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCT-TGAATCTTGGCTTTTACGT 172333 Query 42137 CGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | ||| | || || || | || ||||| || || || | ||||| | Sbjct 172332 TTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTGA 172273 Query 42196 CAAAGATTTGCATT 42209 |||||||||||||| Sbjct 172272 CAAAGATTTGCATT 172259 Score = 82.4 bits (90), Expect = 8e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| |||| || ||| || | || || | |||||| ||||| || Sbjct 172907 CTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGCTTTCCAGCAAA 172848 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||| || || | ||| | | ||||||||| ||| || |||| | Sbjct 172847 GATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 172788 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || | || || || | |||||||| || || || || |||||||| Sbjct 172787 CTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTAC 172728 Query 42197 AAAGATTTGCATT 42209 || || |||||| Sbjct 172727 GAAAATCTGCATT 172715 >seq131 Length=226272 Score = 82.4 bits (90), Expect = 8e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 57072 |||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 148585 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAC 148533 Score = 82.4 bits (90), Expect = 8e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 57072 |||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 149981 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAC 149929 >seq90 Length=274721 Score = 82.4 bits (90), Expect = 8e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 57072 |||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 272225 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAC 272173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543121825436320