Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq85 91.5 1e-13 seq78 89.7 5e-13 seq89 84.2 2e-11 >seq85 Length=280044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| | |||||||| | | |||| || ||||| ||||| ||||| || ||||| ||| Sbjct 114579 TCCTCCAACTGTTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTG 114520 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || |||| | ||| | ||| || | | ||| ||||| | ||| | Sbjct 114519 TCCTGGATCTTGGCCTTTACATTTTCTATGGTATCAGAAGGCTCGACCTCTAGCGTGATG 114460 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||| ||||| || |||||||||||||| Sbjct 114459 GTCTTCCCAGTGAGAGTCTTGACAAAAATCTGCAT 114425 >seq78 Length=312069 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||| ||| | |||||| || || | || || |||| | Sbjct 172681 GATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTTCCGGCA 172622 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || || ||||||||||| |||||| ||| | Sbjct 172621 AAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTAACA 172562 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | ||| || || | || | || || || || || || ||| Sbjct 172561 TTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTT 172502 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 172501 ACGAAAATCTGCAT 172488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || || | || || || | | Sbjct 172909 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGCTTTCCAGCA 172850 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||||||||| || || || || ||||| ||||| ||| || || | Sbjct 172849 AAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACA 172790 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | | ||| || || | || | || || || || || || ||| Sbjct 172789 TTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTT 172730 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 172729 ACGAAAATCTGCAT 172716 >seq89 Length=276290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || ||||||||||| || || | ||||| || || | |||| |||| | | | Sbjct 106342 TCTTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCCAATTGTCTACCAGCAAAT 106283 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543 || || | |||||| || || || || |||||||| || || | |||| |||||| | Sbjct 106282 ATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCC-TGTATCTTTGCTTTAATATT 106224 Query 138544 -TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 |||| || || | | || || || | || | ||||||||||||||||||||||| Sbjct 106223 CTCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTAC 106164 Query 138603 AAAAATCTGCATG 138615 ||| || |||||| Sbjct 106163 AAATATTTGCATG 106151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496179288454560