Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq78 127 1e-24 seq89 113 3e-20 seq85 89.7 4e-13 >seq78 Length=312069 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| ||||| |||||||| ||||||||||| | | | | | ||||| Sbjct 172469 AACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTC 172410 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || |||||||| | || | |||||| || ||| |||||||||||||||||| Sbjct 172409 AAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTG 172350 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| |||||| |||| || |||||| | || || || | |||||||| || Sbjct 172349 AATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTT 172290 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || ||||| |||||||| Sbjct 172289 TCCGGTCAAAGTCTTGACAAAGATTTGCAT 172260 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||||||||| || || || |||||||| ||| ||| | | | ||||| Sbjct 172013 AACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCTTC 171954 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| ||||||||| | || | |||||| ||||| ||| |||||||||||||| Sbjct 171953 AAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTG 171894 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || || | || || || || | || || || | ||| ||||| || Sbjct 171893 GATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTGATGGTCTT 171834 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || ||||| || || |||||||| ||| Sbjct 171833 TCCGGTAAGTGTTTTCACGAAGATTTGCATCTTT 171800 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || ||||| || ||||| |||||||||||| ||| | | | ||||| Sbjct 172697 AACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTC 172638 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || || || | || | |||||| || ||| ||| |||||||| ||||| Sbjct 172637 CAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTG 172578 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| ||| ||| |||| ||||| || | || || || | || ||||| || Sbjct 172577 GATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTT 172518 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| ||||| ||||| Sbjct 172517 TCCGGTAAGTGTCTTTACGAAAATCTGCAT 172488 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| ||||| || ||||| |||||||| || | | | | | ||||| Sbjct 172925 AACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTC 172866 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || ||||| | || | ||||||||| || ||| |||||||||||||| Sbjct 172865 CAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTG 172806 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || ||||| | || || || | || ||||| || Sbjct 172805 GATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTT 172746 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| ||||| ||||| Sbjct 172745 TCCGGTAAGTGTCTTTACGAAAATCTGCAT 172716 >seq89 Length=276290 Score = 113 bits (124), Expect = 3e-20 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 |||||||| | ||| |||||||| ||||| ||||| ||||| | || | |||| Sbjct 106360 ACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATC--TGAGAGTGTACGACCATCTT 106303 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | |||||| | ||||| |||| | | |||||| || ||| |||||||| || || Sbjct 106302 CCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCT 106243 Query 15086 AAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || |||||||| | | | || |||||||| | ||| || || | ||||| ||| Sbjct 106242 GTATCTTTGCTTTA-ATATTCTCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTT 106184 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||||||||||||||| |||||||| Sbjct 106183 TTACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 109 bits (120), Expect = 4e-19 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 |||||||| | ||| || ||||| ||||| ||||| ||||| | || | |||| Sbjct 106588 ACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATC--TGAGAGTGTACGACCATCTT 106531 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||| ||| ||||| |||| | | |||||| || ||| |||||||| || || Sbjct 106530 CCAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCT 106471 Query 15086 AAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || |||||||| ||| | || |||||||| | ||| || || | ||||| ||| Sbjct 106470 GTATCTTTGCTTTA-ACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTT 106412 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||||||||||||||| |||||||| Sbjct 106411 TTACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 Score = 87.8 bits (96), Expect = 1e-12 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 14995 ATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAAC 15052 ||||| ||||| ||||| | || | ||| | ||| ||| ||||| |||| | | Sbjct 107986 ATGTTATAATC--TGAGAGTGTACGATCATCTACCAATACTTTACCAGCAAATATGAGTC 107929 Query 15053 GCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATA 15111 |||||| || ||| |||||||| || || || |||||||| ||| | || ||| Sbjct 107928 TCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTA-ACATTCTCAATA 107870 Query 15112 GTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15171 ||||| | ||| || || | ||||| ||| |||| ||||||||||||||||| ||| Sbjct 107869 GTATCAGAAGGTTCAACTTCAAGAGTAATTGTTCTACCAGTCAGAGTTTTTACAAATATT 107810 Query 15172 TGCAT 15176 ||||| Sbjct 107809 TGCAT 107805 >seq85 Length=280044 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 |||| || ||||| ||||| ||| ||| | || || || ||||| ||||| | | Sbjct 114614 CTTTCTGGATGTTATAATCAGAGAGGGTTCGACCATCCTCCAACTGTTTACCAGCAAAGA 114555 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 | | ||||| ||||| || || ||||||||||| || ||| |||||| ||| Sbjct 114554 TGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 114495 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 |||| ||||| | || || |||| || ||||| || || || ||||| || |||| Sbjct 114494 CTATGGTATCAGAAGGCTCGACCTCTAGCGTGATGGTCTTCCCAGTGAGAGTCTTGACAA 114435 Query 15167 AAATTTGCATATTTGAA 15183 |||| ||||| ||| || Sbjct 114434 AAATCTGCATCTTTAAA 114418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357333642130430