Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq78 102 8e-17 seq85 95.1 1e-14 >seq78 Length=312069 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||||||||| || |||||||| || ||||| ||| || ||||| || ||| Sbjct 172456 GTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTCAAGCTGCTTGCCA 172397 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || |||| | |||||||||||||| || || || ||||||| | ||| | | || || Sbjct 172396 GCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGT-CTTGAATCTTGGCTTT 172338 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | ||| || | | ||| ||||| | || | || || ||||||| ||| Sbjct 172337 TACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTTTCCGGTCAAAGT 172278 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 172277 CTTGACAAAGATTTGCAT 172260 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| |||||||| ||||| || || || || ||| || | ||| |||||| Sbjct 172912 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGCTTTCCA 172853 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| ||||| || || || || ||||||||| ||| || |||| Sbjct 172852 GCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTG 172793 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | | ||| ||||| | || | || || ||||| || || Sbjct 172792 ACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTC 172733 Query 127097 TTTACAAAAATCTGCAT 127113 ||||| ||||||||||| Sbjct 172732 TTTACGAAAATCTGCAT 172716 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || ||||| || ||||||||| | || || ||| || | ||| ||||| Sbjct 172684 GTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTTCCG 172625 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||||||||| || || || || ||||| |||||| || Sbjct 172624 GCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTA 172565 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | | ||| ||||| | || | || || ||||| || || Sbjct 172564 ACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTC 172505 Query 127097 TTTACAAAAATCTGCAT 127113 ||||| ||||||||||| Sbjct 172504 TTTACGAAAATCTGCAT 172488 >seq85 Length=280044 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| || || || ||||| | || ||| ||| || | |||||| ||||| ||| Sbjct 114614 CTTTCTGGATGTTATAATCAGAGAGGGTTCGACCATCCTCCAACTGTTTACCAGCAAAGA 114555 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 | | ||||||||| || ||||| ||||| ||||||||| ||| || ||| | | || Sbjct 114554 TGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 114495 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 | | ||| || | | |||||| || | || | || || || || ||||| || |||| Sbjct 114494 CTATGGTATCAGAAGGCTCGACCTCTAGCGTGATGGTCTTCCCAGTGAGAGTCTTGACAA 114435 Query 127104 AAATCTGCAT 127113 |||||||||| Sbjct 114434 AAATCTGCAT 114425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475421165503520