Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq89 114 1e-20 seq78 113 4e-20 >seq89 Length=276290 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| ||||| ||| ||| ||||| || |||||||| ||| || | || ||| | Sbjct 106360 ACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATC--TGAGAGTGTACGACCATCTT 106303 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 |||||||| | || || |||| | || || || || || || || ||||||||||| | Sbjct 106302 CCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCT 106243 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || ||| ||| || || | || || |||| || ||||| ||||||| |||| Sbjct 106242 GTATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTT 106183 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || |||||||||||||| |||||||| Sbjct 106182 TACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 102 bits (112), Expect = 7e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 45149 TTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCG 45206 ||||||||| || |||||||| ||| || | || ||| |||||| ||| || || Sbjct 106571 TTCCTTTTGAATGTTATAATC--TGAGAGTGTACGACCATCTTCCAATATTTTACCAGCA 106514 Query 45207 TATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATC 45266 |||| | || || || || || || || ||||||||||| || || ||| ||| | Sbjct 106513 AATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAACA 106454 Query 45267 GCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTT 45326 || | || || |||| || ||||| ||||||| ||||| || || ||||||||| Sbjct 106453 TTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTT 106394 Query 45327 ACAAAAATTTGCAT 45340 ||||| |||||||| Sbjct 106393 ACAAATATTTGCAT 106380 >seq78 Length=312069 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | || ||||| || || |||||||||||||| || |||||| Sbjct 172717 ATTCCTCCCCTGAGGCGGAGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCG 172658 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||| || ||||| || | || | || ||||| || || Sbjct 172657 GAAAGAGTACGGCCATCTTCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGT 172598 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| ||||| ||| | ||| | ||||| |||| ||| Sbjct 172597 GGGATTCCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCA 172538 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || || ||||| || || ||||| ||||| ||||| Sbjct 172537 ACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451927500764080