Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq78 134 3e-26 seq85 96.9 8e-15 >seq78 Length=312069 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || || || |||| |||||| |||| |||||| | |||||| Sbjct 172243 AGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAAGTGCGGCCATCT 172184 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||| ||||| |||||||||||||| || |||||||| ||| Sbjct 172183 TCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATTCCTTCCTTGTCC 172124 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||||| | | || || || | ||||| ||| Sbjct 172123 TGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTC 172064 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || ||||| Sbjct 172063 TTTCCGGTAAGTGTCTTCACGAAGATTTG 172035 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || ||||| ||||||| |||||| |||| |||||| | |||||| Sbjct 172471 AGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCT 172412 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| ||||||||||| || || ||||||||| || Sbjct 172411 TCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCT 172352 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || ||| ||| | ||| || | | || || || | || || ||| Sbjct 172351 TGAATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTC 172292 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || ||||| ||||| Sbjct 172291 TTTCCGGTCAAAGTCTTGACAAAGATTTG 172263 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || |||||||| || | ||||||||| | | ||| | |||||| Sbjct 172015 AGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCT 171956 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || |||||||| |||||||||||||| || |||||||| || Sbjct 171955 TCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCT 171896 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || || | ||||| ||| Sbjct 171895 TGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTGATGGTC 171836 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || |||||||| || ||||| Sbjct 171835 TTTCCGGTAAGTGTTTTCACGAAGATTTG 171807 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || ||||||||||| | ||||||||||| |||||| | |||||| Sbjct 172927 AGAACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCT 172868 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||| || ||||| |||||||| || || || |||||||| ||| Sbjct 172867 TCCAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCC 172808 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||| || | | || || || | ||||| ||| Sbjct 172807 TGGATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTC 172748 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| || Sbjct 172747 TTTCCGGTAAGTGTCTTTACGAAAATCTG 172719 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || |||||||||| |||||| || | | ||| | |||||| Sbjct 172699 AGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCT 172640 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||| ||||| ||||||||||| || || ||||||||| || Sbjct 172639 TCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCT 172580 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || ||| | ||||| | | || || || | ||||| || Sbjct 172579 TGGAT-TTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGT 172521 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || ||||| || Sbjct 172520 CTTTCCGGTAAGTGTCTTTACGAAAATCTG 172491 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||| |||||||||||| | |||||||| | |||||| | ||||||||| ||||| Sbjct 172158 CTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAACATCCAG 172217 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 ||||| || || || || |||||| Sbjct 172218 AAAGAATCCACACTCCATCTTGTT 172241 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||| || || |||||| | |||||||| | |||||| | ||||||||| |||| Sbjct 172386 CTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAACATCCAA 172445 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 ||||||||||| ||||| |||||| Sbjct 172446 AAAGAGTCTACACTTCATCTTGTT 172469 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||| ||||||||||||||||||||||| | ||| | ||||||||||| |||| Sbjct 172614 CTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAACATCCAA 172673 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 || || ||||| || || |||||| Sbjct 172674 AAGGAATCTACACTCCATCTTGTT 172697 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||| || |||||||||||||||||||| | |||||| | || |||||| | || Sbjct 172842 CTTATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACAACATTCAA 172901 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 || |||||||| ||||| |||||| Sbjct 172902 AAGGAGTCTACACTTCATCTTGTT 172925 >seq85 Length=280044 Score = 96.9 bits (106), Expect = 8e-15 Identities = 135/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||| || |||| | || | ||||| |||| ||| || || || ||| Sbjct 114615 CCTTTCTGGATGTTATAATCAGAGAGGGTTCGACCATCCTCCAACTGTTTACCAGCAAAG 114556 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 ||||| ||||||||||| ||| || ||||| ||||| ||||| ||| || | Sbjct 114555 ATGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTT 114496 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | ||| || | | || || || | |||||| ||||| || |||||||| || ||| Sbjct 114495 TCTATGGTATCAGAAGGCTCGACCTCTAGCGTGATGGTCTTCCCAGTGAGAGTCTTGACA 114436 Query 199619 AAAATTTG 199626 ||||| || Sbjct 114435 AAAATCTG 114428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178719224107666