Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq89 116 3e-21 >seq89 Length=276290 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||| ||| ||||| |||||||| || ||||||||||| || |||||||| | Sbjct 106379 GCCACCTCGACGACGAAGTACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTGA 106320 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | || |||| ||||||||| | || |||| || | | ||| ||||| | || Sbjct 106319 GAGTGTACGACCATCTTCCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGG 106260 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||| || ||| ||| |||||| || | | || || | ||| || Sbjct 106259 GATTCCTTCTTTATCCTGTATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCAAC 106200 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||||||||||||| || | ||||||||| || || |||||| Sbjct 106199 TTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCATG 106151 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 39498 TCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAAC 39557 ||| |||| ||||| ||||| || || ||||| ||||| || |||||||| | | Sbjct 106601 TCGAAAACAAAGTACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGT 106542 Query 39558 GCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCC 39617 || |||| |||||| ||| || |||| || | | ||| ||||| | || | || Sbjct 106541 ACGACCATCTTCCAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCC 106482 Query 39618 TTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAA 39677 |||||| || ||| ||| ||||| || | | || || | ||| || || | Sbjct 106481 TTCTTTATCCTGTATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAG 106422 Query 39678 AGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||||||||||||| || | ||||||||| || || |||||| Sbjct 106421 AGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCATG 106379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347312878669334