Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq584 109 6e-19 seq4912 104 3e-17 seq100 104 3e-17 seq518 87.8 2e-12 >seq584 Length=56656 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 153897 TACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAAC 153956 |||||| ||||||| ||||| ||||||||| || |||||||| || || || |||||| Sbjct 10710 TACAGACTAGCACTGCAGACAAGAGAGCAGTTCATTAGGAGAGAGAAGGCCACTAGTAAC 10769 Query 153957 ATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGT 154016 || ||||| || || ||||||||||||||| | || | | ||||||| |||||||| Sbjct 10770 ATATGCACTGCCCAAGCACTGCTGGCTAATGTATCAGCTATGTATGCAGTGTATCATGGA 10829 Query 154017 GCAGATGGACTACATGCTATAGCAA 154041 | | ||||| | | ||| |||| Sbjct 10830 CCCAAGGGACTGAAGGATATTGCAA 10854 >seq4912 Length=2635 Score = 104 bits (114), Expect = 3e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 153897 TACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAAC 153956 |||||| ||||||||||||| ||||||||| || |||||||| || || ||||||||| Sbjct 2531 TACAGACTAGCACTACAGACAAGAGAGCAGTTCATTAGGAGAGAGAAGGCCACCAGTAAC 2590 Query 153957 ATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986 || ||||| || || ||||||||||||||| Sbjct 2591 ATATGCACTGCCCAAGCACTGCTGGCTAAT 2620 >seq100 Length=257486 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 153897 TACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAAC 153956 |||||| ||||||||||||| ||||| ||| || |||||||| || || ||||||||| Sbjct 242621 TACAGACTAGCACTACAGACAAGAGAACAGTTCATAAGGAGAGAGAAGGCCACCAGTAAC 242562 Query 153957 ATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGT 154016 || ||||| || || || ||||||||||| | || | | ||||||| |||||||| Sbjct 242561 ATATGCACTGCCCAAGCTTTGCTGGCTAATGTATCAGCTATGTATGCAGTGTATCATGGA 242502 Query 154017 GCAGATGGACTACATGCTATAGCAA 154041 | | ||||| | | ||| |||| Sbjct 242501 CCCAAAGGACTGAAGGATATTGCAA 242477 >seq518 Length=66445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 153900 AGATTAGCACTACAGACTAGAGAGCAGCATATCA---GGAGAGACAAAGCAACCAGTAAC 153956 ||| ||||||||||||| |||| | | ||| ||||||| ||||| ||||||||| Sbjct 18564 AGACTAGCACTACAGACAGGAGAATAATAGTTCATTAGGAGAGAAAAAGCCACCAGTAAC 18623 Query 153957 ATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGG 154015 || || || || || ||||||||||||||| | || | | ||||||| |||||||| Sbjct 18624 ATATGTACTGCACAAGCACTGCTGGCTAATGTATCAGCTATGTATGCAGTGTATCATGG 18682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579115796336320