Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq97 129 7e-25 seq576 102 9e-17 >seq97 Length=262405 Score = 129 bits (142), Expect = 7e-25 Identities = 220/319 (69%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| ||||||||||| | |||||| || || |||||| |||| || | |||||| || Sbjct 93739 TTATTCCCTCCTTGATCAACATATCTTGCTGTGTTGTTAAAAACCCTCAGCATTGGTACC 93680 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 | ||||| || | |||||||| || | ||||||||| ||| | || ||| || | Sbjct 93679 AGGCCATTAGAAGTGCCATTGGTGCCAGCAATATAACTACCAGACGATCGTATCTTGTGA 93620 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 | | | ||| ||||| || || | || ||||| ||||| | || | ||||||| Sbjct 93619 ACAGCTAGACCAATACCCCCGGCACTCTTTGATATATTGGCACATCTCTTCAAGGTATCA 93560 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 || || || ||||| || || ||| | | || ||||| || | || ||| Sbjct 93559 TATATACCCTCTATGGAGTCGTCGGCCATTGTGAGGAGGAAACAGGAGGAGAGCTGAGGA 93500 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 ||||||| || ||||| || ||||| || || |||||| | ||||| ||| || | | Sbjct 93499 CGACAAGTACCAGAATTGAACAATGTCGGTGAAGCATGAGTGAACCAACGCTCAGACATC 93440 Query 48654 AATTTATATGTTTCAATAA 48672 | ||||| || | || || Sbjct 93439 AGGTTATAGGTCTAAACAA 93421 >seq576 Length=57293 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 19038 tttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGC 19097 ||| || | ||||||||| | ||||| || || || |||||||| || || || ||||| Sbjct 19092 TTTCTTGAGCCAGAATATTGCTGCAAAAGAGCCGGAGAAGAATATTCCCTCAACAGCTGC 19033 Query 19098 AAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCA 19157 |||||||| | ||| || ||| || | |||| | | |||||||| || | ||||| Sbjct 19032 AAAAGCAATGACTCTCTCGCCAAAAGAATCATCCTCAGACTGAATCCAATTGATGGCCCA 18973 Query 19158 ATCAGCCTTCTTTTTTACACATGGCA 19183 |||||| ||||| || ||||| |||| Sbjct 18972 ATCAGCTTTCTTCTTAACACAAGGCA 18947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||| | ||| ||||| |||||||| || ||||||||||| || |||| ||||||||| | Sbjct 19373 ACATGAGACAAGCAAAGTCACAATGGAGACCCTCGTCTCTGCTGATCAGTTCATTAGAGA 19314 Query 19013 ATGTTAAACCAGGCATCA 19030 |||| | ||||||||||| Sbjct 19313 ATGTCAGACCAGGCATCA 19296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562014660828720