Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq78 174 1e-38 seq89 149 5e-31 seq431 98.7 8e-16 seq460 87.8 1e-12 >seq78 Length=312069 Score = 174 bits (192), Expect = 1e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || | ||| | ||| || |||||||| ||||| || |||||||||| Sbjct 172716 TTCCTCCCCTGAGGCGGAGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGG 172657 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | |||| ||||| ||||| || ||||| || | |||||| |||||||| | Sbjct 172656 AAAGAGTACGGCCATCTTCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTG 172597 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||| ||||| ||||| ||| ||| |||| | ||||||||| | || | Sbjct 172596 GGATTCCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAA 172537 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||| || || ||||| | || ||||| || |||||||| Sbjct 172536 CTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172488 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || | ||| | |||||| ||||| |||||||| || |||||||| | Sbjct 172488 TTCCTCCCCTGAGGCGGAGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAG 172429 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | |||| || | ||||| || ||||| || | |||||| |||||||| | Sbjct 172428 ACAAAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTG 172369 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || |||||||| || |||||| |||| | || || || | || | Sbjct 172368 GAATTCCTTCCTTGTCTTGAATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAA 172309 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| | || || ||||| ||||| || ||||| || ||||| Sbjct 172308 CTTCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 172260 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | |||||| ||||| || ||||| || ||||| || | | ||| | | |||| || Sbjct 172925 AACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTC 172866 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||| ||||| || ||||| || | |||||||||||| || || || ||||| || || || Sbjct 172865 CAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTG 172806 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || ||| | || | || ||||| | || ||||||||||||| || || Sbjct 172805 GATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTT 172746 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || ||||| || |||||||| Sbjct 172745 TCCGGTAAGTGTCTTTACGAAAATCTGCAT 172716 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | || | ||| | ||| || || |||||||| || || |||||||| | Sbjct 172260 TTCCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAG 172201 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | |||| || | ||||| || ||||| || | |||||| || ||||| | Sbjct 172200 ACAAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTG 172141 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || || || || || || || | || | ||||||||| | || | Sbjct 172140 GGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAA 172081 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||| || || ||||| | || || || || || ||||| Sbjct 172080 CTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 172032 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || | ||| | |||||||||||| || || || || ||||| |||| Sbjct 172032 TTCCTCCCCTGAGGCGGAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGG 171973 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | |||| || | |||||| || || || || | |||||| || || || | Sbjct 171972 AAAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTG 171913 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || ||||| || || || || | || | |||||||| | || | Sbjct 171912 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAA 171853 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| |||| || || ||||| | ||||| || || || ||||| Sbjct 171852 CTTCAAGGGTGATGGTCTTTCCGGTAAGTGTTTTCACGAAGATTTGCAT 171804 >seq89 Length=276290 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| | ||| ||||||||| || || ||||| | || || | |||| ||| Sbjct 106360 ACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCC 106301 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| |||| |||||||| | | ||||||||| || || || ||||||||||| || Sbjct 106300 AATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGT 106241 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| ||| | | | || | ||| ||||| | ||| ||||||||||| | ||||| Sbjct 106240 ATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTA 106181 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||||||||||||||| |||||| Sbjct 106180 CCAGTCAGAGTTTTTACAAATATTTGCATG 106151 Score = 145 bits (160), Expect = 6e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| | ||| ||| ||||| || || ||||| | || || | |||| ||| Sbjct 106588 ACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCC 106529 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||| ||||| |||||||| | | ||||||||| || || || ||||||||||| || Sbjct 106528 AATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGT 106469 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| ||| ||| | || | ||| ||||| | ||| ||||||||||| | ||||| Sbjct 106468 ATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTA 106409 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||||||||||||||| |||||| Sbjct 106408 CCAGTCAGAGTTTTTACAAATATTTGCATG 106379 Score = 118 bits (130), Expect = 8e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| ||||| ||||| |||||||| | | ||||||||| || || || ||||||| Sbjct 107961 CATCTACCAATACTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTT 107902 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 |||| || || ||| ||| ||| | || | ||| ||||| | ||| ||||||||||| | Sbjct 107901 TATCCTGTATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAA 107842 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||| | || || | ||||||||||||||| |||||| Sbjct 107841 TTGTTCTACCAGTCAGAGTTTTTACAAATATTTGCATG 107804 >seq431 Length=85469 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 101253 AACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGG 101312 |||| | |||||||| | || ||| |||| ||||| ||||| | || || | Sbjct 84221 AACGAAGTACTAAATGTATTGTGCTTTCCGTTTGAATATTATAATCTGAGAGTGTACAAC 84162 Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| |||||||| |||| ||| |||| | | ||||||||| || || || ||||||| Sbjct 84161 CATCTTCCAATTGTCTACCAGCATATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTT 84102 Query 101373 --TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGT 101430 |||| || || | ||| ||| | || | ||| ||||| | | | ||||||||||| Sbjct 84101 CATATCCTGTATAGCTCCTTTAACATTCTCAATAGTATCAGAAGATACAACTTCAAGAGT 84042 Query 101431 GACCGTTTTGCCGGTTAAAGTTTTTACA 101458 | ||||| || || | |||||| ||| Sbjct 84041 AATTGTTTTACCAGTCAGAGTTTTCACA 84014 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||| ||||| ||||||| | | ||||||||| || || || |||||||| Sbjct 81178 ATCTTCCAATACTTTACCAGCAAATAAAAGCCTCTGTTGATCAGGTGGGATTCCTTCTTT 81119 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| || || || ||| ||| | || | ||| ||||| | ||| ||| ||||||| | Sbjct 81118 ATCCTGTATCTTCGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTCCAAGAGTAAT 81059 Query 101434 CGTTTTGCCGGTTAAAGTTTTTA 101456 || ||| ||||| | |||||||| Sbjct 81058 CGCTTTACCGGTCAGAGTTTTTA 81036 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101264 AAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAAT 101323 ||||| | ||| ||| ||||| ||||| ||||| | || || | |||| || ||| Sbjct 84678 AAATGTATTGTACTTTCCTTTTGAATATTATAATCTGAGAGTGTACAACCATCTTCTAAT 84619 Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 || ||||| ||||||| | | ||||||||| | | || ||| ||| ||| || || Sbjct 84618 TGTTTACCAGCAAATACAAGCCTCTGTTGATCAGATGAGATTCCTACTTCATCCTGTATC 84559 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 ||| ||| ||| |||| | ||| |||||| | |||||||| | ||||| || Sbjct 84558 TTTGCTTTAACATTTTCAATAGTATCAGACAGTAAAGCTTCAAGAAAAATTGTTTTACCA 84499 Query 101444 GTTAAAGTTTTTACAAA 101460 || | |||||||||||| Sbjct 84498 GTCAGAGTTTTTACAAA 84482 >seq460 Length=79726 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| |||||||| |||| |||||| | | |||||||| || ||||| ||||||| Sbjct 2856 CATCTTCCAATTGTCTACCATCAAATACAAGTCTCTGTTGATTAGGTGGAATTCCTTCTT 2915 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 | || || || ||| || ||| | || | | | |||| ||| ||||||||||| | Sbjct 2916 TCTCCTGTATCTTTATCTTAACATTCTCAATACTATCAGTGCGTTCAACTTCAAGAGTAA 2975 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATAT 101463 ||||| || || | |||||||| |||||| Sbjct 2976 TGGTTTTACCAGTCAGAGTTTTTAAAAATAT 3006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396213692443086