Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq89 107 1e-18 seq78 104 2e-17 seq85 102 6e-17 >seq89 Length=276290 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| | ||| || ||||||||||| || ||||| || || | ||| | || ||| Sbjct 106360 ACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCC 106301 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || |||| |||||||| |||| ||||||||| | || | || || || || Sbjct 106300 AATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGT 106241 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| | | ||| || || || | || || || | ||||| ||||| Sbjct 106240 ATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTA 106181 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||||||||| || ||||| Sbjct 106180 CCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||||| || || || |||||||| || ||||| || || | ||| | || ||| Sbjct 106588 ACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCC 106529 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| |||||||| |||| ||||||||| | || | || || || || Sbjct 106528 AATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGT 106469 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | || || || | || || || | ||||| ||||| Sbjct 106468 ATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTA 106409 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||||||||| || ||||| Sbjct 106408 CCAGTCAGAGTTTTTACAAATATTTGCAT 106380 >seq78 Length=312069 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | ||| || || ||||||||| || ||||||||||| Sbjct 172486 CCTCCCCTGAGGCGGAGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGAC 172427 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || | |||||| || ||||| || || ||||| ||||| | ||| Sbjct 172426 AAAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGA 172367 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| |||||| | | | || || | ||| || Sbjct 172366 ATTCCTTCCTTGTCTTGAATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACT 172307 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || ||||| |||||||| || ||||| || ||||| Sbjct 172306 TCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 172260 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | ||| || || ||| |||||||| ||||| ||||| Sbjct 172942 CCACCCCTCAGGCGGAGAACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGAC 172883 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || ||||||||||| || ||||| || || ||||||||||| | || Sbjct 172882 AAAGTACGGCCATCTTCCAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGG 172823 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||| || ||| | | | || || | ||| || Sbjct 172822 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACT 172763 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| || | || ||||| ||||||||||| Sbjct 172762 TCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172716 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | ||| || || || ||||| || |||||||| || Sbjct 172714 CCTCCCCTGAGGCGGAGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAA 172655 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || ||||||||||| |||||||| || || ||||| ||||| | || Sbjct 172654 AGAGTACGGCCATCTTCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGG 172595 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| || || ||| ||| | | || || || | ||| || Sbjct 172594 ATTCCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACT 172535 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| || | || ||||| ||||||||||| Sbjct 172534 TCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172488 >seq85 Length=280044 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| || || || |||||||| || ||||| | || |||||||| ||||| ||||| | Sbjct 114614 CTTTCTGGATGTTATAATCAGAGAGGGTTCGACCATCCTCCAACTGTTTACCAGCAAAGA 114555 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | |||||||| || || | || | ||| |||||||| ||||| |||||| Sbjct 114554 TGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 114495 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || || | ||| ||||| | ||| || || || || || | ||| || |||| Sbjct 114494 CTATGGTATCAGAAGGCTCGACCTCTAGCGTGATGGTCTTCCCAGTGAGAGTCTTGACAA 114435 Query 48757 AAATCTGCATC 48767 ||||||||||| Sbjct 114434 AAATCTGCATC 114424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380875397413554