Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq576 84.2 4e-11 >seq576 Length=57293 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 ||||||||||| ||||| || |||||||| |||||||| || ||||| || || || || Sbjct 19088 TTGAGCCAGAATATTGCTGCAAAAGAGCCGGAGAAGAATATTCCCTCAACAGCTGCAAAA 19029 Query 48272 GCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT-TGTCTGAGATCCAGGAAAGCGCCCAGTC 48330 || ||| ||||| || |||||| | | || | |||| ||||| | ||||| || Sbjct 19028 GCAATGACTCTCTCGCCAAAAGAATCATCCTCAGACTGA-ATCCAATTGATGGCCCAATC 18970 Query 48331 TGCCTTCTTCTTGATGCATGGCA 48353 || |||||||| | || |||| Sbjct 18969 AGCTTTCTTCTTAACACAAGGCA 18947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931376791544320