Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq89 116 3e-21 seq78 84.2 2e-11 >seq89 Length=276290 Score = 116 bits (128), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||||||||| | || |||||||| ||||| ||| |||||||| Sbjct 106152 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106211 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || ||| || | || ||| || || ||||| ||| | || |||||| Sbjct 106212 GATACTATGGAGAATATTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 106271 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 |||||||| || ||||| || | ||||||||||||| || | ||| | | ||||||| Sbjct 106272 CAGAGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCGTACACTCT--CAGATTATA 106329 Query 28732 ACATTCAAAAAGAATCTACTCTGCA 28756 |||||||||||||| ||| |||| Sbjct 106330 ACATTCAAAAAGAAAGTACGTTGCA 106354 Score = 102 bits (112), Expect = 7e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||||||||| | || |||||||| ||||| ||| |||||||| Sbjct 106380 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106439 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||| || || ||||| ||| | || |||||| Sbjct 106440 GATACTATTGAGAATGTTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 106499 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 |||||||| || ||||| || ||| |||||||||| || | ||| | | ||||||| Sbjct 106500 CAGAGACTCATATTTGCTGGTAAAATATTGGAAGATGGTCGTACACTCT--CAGATTATA 106557 Query 28732 ACATTCAAAAAGAA 28745 |||||||||| ||| Sbjct 106558 ACATTCAAAAGGAA 106571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/189 (70%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||||||||| | || |||| ||| ||||| ||| |||||||| Sbjct 107805 ATGCAAATATTTGTAAAAACTCTGACTGGTAGAACAATTACTCTTGAAGTTGAACCTTCT 107864 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||| || || ||||| ||| | || |||||| Sbjct 107865 GATACTATTGAGAATGTTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 107924 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 |||||||| || ||||| || ||| ||||| |||| || | ||| | | ||||||| Sbjct 107925 CAGAGACTCATATTTGCTGGTAAAGTATTGGTAGATGATCGTACACTCT--CAGATTATA 107982 Query 28732 ACATTCAAA 28740 ||||| ||| Sbjct 107983 ACATTAAAA 107991 >seq78 Length=312069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || ||||| ||| | || || || ||||| || ||| || ||||| Sbjct 172487 AATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172546 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || |||||| |||||||| ||| | || ||||| Sbjct 172547 TGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCCGATCA 172606 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | ||||||||||| || || || ||||||||| ||| | ||||||| || Sbjct 172607 GCAGCGTCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAA 172666 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||| ||||| |||||||| || || Sbjct 172667 CATCCAAAAGGAATCTACACTCCA 172690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || ||||| ||| | || || || ||||| || ||| || ||||| Sbjct 172715 AATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172774 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| || ||| ||||| || ||| | || ||||| Sbjct 172775 TGATACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCTGATCA 172834 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | ||||||||||| || || || ||||||||| ||| || | || || || Sbjct 172835 ACAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACAA 172894 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||||||| || ||||| || || Sbjct 172895 CATTCAAAAGGAGTCTACACTTCA 172918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425335336447842