Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq584 102 9e-17 seq4912 96.9 4e-15 seq100 93.3 5e-14 seq518 82.4 9e-11 >seq584 Length=56656 Score = 102 bits (112), Expect = 9e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 139246 TTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTG 139305 |||| ||| | | ||||| | | |||||||| ||||||| | | || | ||| | Sbjct 10854 TTGCAATATCCTTCAGTCCCTTGGGTCCATGATACACTGCATACATAGCTGATACATTAG 10795 Query 139306 CGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCT 139365 | ||||||||||| || ||||| |||||||| || || || ||||| ||||| ||||| Sbjct 10794 CCAGCAGTGCTTGGGCAGTGCATATGTTACTAGTGGCCTTCTCTCTCCTAATGAACTGCT 10735 Query 139366 CTCTAGTTTGTAGTGCTAATCTGTATGCAGG 139396 |||| || || ||||||| |||||| | ||| Sbjct 10734 CTCTTGTCTGCAGTGCTAGTCTGTAGGTAGG 10704 >seq4912 Length=2635 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 139301 ATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATG 139360 ||| || ||||||||||| || ||||| ||||||||||| || || ||||| ||||| Sbjct 2620 ATTAGCCAGCAGTGCTTGGGCAGTGCATATGTTACTGGTGGCCTTCTCTCTCCTAATGAA 2561 Query 139361 CTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGG 139396 ||||||||| || |||||||||| |||||| | ||| Sbjct 2560 CTGCTCTCTTGTCTGTAGTGCTAGTCTGTAGGTAGG 2525 >seq100 Length=257486 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 139246 TTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTG 139305 |||| ||| | | ||||| | | |||||||| ||||||| | | || | ||| | Sbjct 242477 TTGCAATATCCTTCAGTCCTTTGGGTCCATGATACACTGCATACATAGCTGATACATTAG 242536 Query 139306 CGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCT 139365 | |||| ||||| || ||||| ||||||||||| || || ||||| || || ||| | Sbjct 242537 CCAGCAAAGCTTGGGCAGTGCATATGTTACTGGTGGCCTTCTCTCTCCTTATGAACTGTT 242596 Query 139366 CTCTAGTTTGTAGTGCTAATCTGTATGCAGG 139396 |||| || |||||||||| |||||| | ||| Sbjct 242597 CTCTTGTCTGTAGTGCTAGTCTGTAGGTAGG 242627 >seq518 Length=66445 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 |||||||| ||||||| | | || | ||| || |||||||||||||| || || ||| Sbjct 18682 CCATGATACACTGCATACATAGCTGATACATTAGCCAGCAGTGCTTGTGCAGTACATATG 18623 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAAT---ATGCTGCTCTCTAGTTTGTAGTGCTAATCT 139387 |||||||| ||||| ||||| ||||| | | |||| || |||||||||| ||| Sbjct 18622 TTACTGGTGGCTTTTTCTCTCCTAATGAACTATTATTCTCCTGTCTGTAGTGCTAGTCT 18564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578901432242960