Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq89 178 2e-39 seq78 138 2e-27 seq431 127 4e-24 seq460 102 1e-16 >seq89 Length=276290 Score = 178 bits (196), Expect = 2e-39 Identities = 181/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||| |||||||| | |||||| ||| ||||| ||| ||| Sbjct 106387 ATTTGCATGCCACCTCGACGACGAAGTACTAAATGCAACGTACTTTCTTTTTGAATGTTA 106328 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | | ||| || |||||| | || ||||| || | |||||||||| Sbjct 106327 TAATCTGAGAGTGTACGACCATCTTCCAATTGTCTACCAGCAAATATGAGTCTCTGTTGA 106268 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||||||||| ||||| || | ||| ||||| |||||||| ||| Sbjct 106267 TCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAATATTCTCCATAGTATCAGAA 106208 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| ||||| || |||||||| || || |||||||||||||||||||| Sbjct 106207 GGTTCAACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193148 AAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATC 193207 |||||| | ||| |||||| || || ||| ||||| || || | || | | ||| Sbjct 106592 AAGTACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATC 106533 Query 193208 GTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 193267 || ||| ||| || ||||| || | ||||||||||||||| || |||||||||||||| Sbjct 106532 TTCCAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATC 106473 Query 193268 TTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGT 193327 ||||| || | ||| | ||| ||||||||| |||| |||||||| ||||| || || Sbjct 106472 CTGTATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGT 106413 Query 193328 TTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || |||||||||||||||||||| Sbjct 106412 TTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 Score = 145 bits (160), Expect = 1e-29 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| ||||| || || | || | | ||| | ||| ||| || ||||| || | ||| Sbjct 107987 AATGTTATAATCTGAGAGTGTACGATCATCTACCAATACTTTACCAGCAAATATGAGTCT 107928 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || |||||||||||||| ||||| || | ||| | ||| |||||| Sbjct 107927 CTGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAACATTCTCAATAGT 107868 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||||| ||||| || ||| |||| || || ||||||||||||||||| Sbjct 107867 ATCAGAAGGTTCAACTTCAAGAGTAATTGTTCTACCAGTCAGAGTTTTTACAAATATTTG 107808 Query 193358 CAT 193360 ||| Sbjct 107807 CAT 107805 Score = 107 bits (118), Expect = 3e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| | |||||||| | ||| || ||| || || ||| ||| Sbjct 106159 ATTTGCATGCCACCTCTAAGACGAAGTACTAAATGTAAAGTACTTTCATTTTGAATGTTA 106100 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | | || || |||||||| || |||| || | |||||||||| Sbjct 106099 TAATCTGAGAGTGTACGACCATTTTCCAATTGTTTACCAACAAATATCAGTCTCTGTTGA 106040 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || ||||||||||| || |||||||| ||| | | || || ||||| | Sbjct 106039 TCAGGTGGGATTCCTTCTTTGTCCTGTATTTTCTCTTTCACACTTTCAACGGTATCACTA 105980 Query 193305 GACTCAACTTCTAGAGTTA 193323 | ||||||||| |||| || Sbjct 105979 GCCTCAACTTCAAGAGATA 105961 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || |||||||| || ||||| || | | ||||||||||||| || |||| ||||||||| Sbjct 106771 TCCAATTGTTTACCAGCAAATATAAGTTTCTGTTGATCAGGTGGGATTCTTTCTTTATCC 106712 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 ||||| || | ||| | ||| |||||||| |||| ||||||| ||| || || Sbjct 106711 TGTATCTTTGCTTTAACATTCTCAATAGTATTAGAAGGTTCAACTTGCAGAAAAATTATT 106652 Query 193329 TTACCTGT 193336 ||||| || Sbjct 106651 TTACCAGT 106644 >seq78 Length=312069 Score = 138 bits (152), Expect = 2e-27 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 193121 AGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAAT 193180 |||| |||| | |||||| |||| || || || ||||| | ||||| ||| || ||| Sbjct 172955 AGTAGTTTAGAAACCACCCCTCAGGCGGAGAACAAGATGAAGTGTAGACTCCTTTTGAAT 172896 Query 193181 ATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTG 193240 || ||||| || || || | ||| || || || ||||| ||||| || | | ||| Sbjct 172895 GTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGCTTTCCAGCAAAGATAAGACGCTG 172836 Query 193241 TTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATC 193300 ||||||||| || |||||||| || || || || || | || | ||| ||| ||||| Sbjct 172835 TTGATCAGGTGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTATC 172776 Query 193301 GGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| ||||||||| ||||| || || || || || || || ||||| || || ||||| Sbjct 172775 AGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172716 Query 193361 T 193361 | Sbjct 172715 T 172715 Score = 123 bits (136), Expect = 4e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | ||||| || || || || || ||||| | || | | Sbjct 172702 CGGAGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCA 172643 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || ||||||||||| || | | ||| ||||| || || ||||||||||| Sbjct 172642 TCTTCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTG 172583 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | |||| |||||| || |||| ||||||||| ||||| || Sbjct 172582 TCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATG 172523 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || ||||| || || |||||| Sbjct 172522 GTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172487 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||| | || || || ||||| | ||| | ||||| || || Sbjct 172267 ATTTGCATTCCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTG 172208 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || || || | ||| || | || ||||||||||| || | | ||| || Sbjct 172207 TAATCAGACAAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGG 172148 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || || || || || | || | || |||||| || ||| Sbjct 172147 TCGGGTGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAA 172088 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||||||||| ||||| || || || || || || || || || || ||||||||| Sbjct 172087 GGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCATT 172031 >seq431 Length=85469 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||||| | || ||||| | ||||| | || || | ||||| ||||| || || Sbjct 81250 ACCACCTCGAAGACGGAGTACTAAATGCATTATATTTTCCATTGAAATTTTATAATCTGA 81191 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || ||| ||| || ||||| | | |||||||||||||| || Sbjct 81190 GAGTGTACGACTATCTTCCAATACTTTACCAGCAAATAAAAGCCTCTGTTGATCAGGTGG 81131 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||||||||| ||||| || | ||| | ||| ||||||||| |||| ||||| Sbjct 81130 GATTCCTTCTTTATCCTGTATCTTCGCTTTAACATTCTCAATAGTATCAGAAGGTTCAAC 81071 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTA 193347 | | ||||| || | |||||| || || ||||||| Sbjct 81070 TCCAAGAGTAATCGCTTTACCGGTCAGAGTTTTTA 81036 Score = 120 bits (132), Expect = 5e-22 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT--CTTTAGAAATATTATAGTCG 193190 |||||||| | |||||||| | ||| | ||| || | | || ||| ||||||| || Sbjct 84232 ACCACCTCGATAACGAAGTACTAAATGTATTGT-GCTTTCCGTTTGAA-TATTATAATCT 84175 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || |||||| | || ||| | || | ||||||||||||||| Sbjct 84174 GAGAGTGTACAACCATCTTCCAATTGTCTACCAGCATATATGAGTCTCTGTTGATCAGGT 84115 Query 193251 GGTATTCCTTCTT--TATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACT 193308 || |||||||||| |||| ||||| ||| | ||| ||||||||| ||||| Sbjct 84114 GGGATTCCTTCTTCATATCCTGTATAGCTCCTTTAACATTCTCAATAGTATCAGAAGATA 84055 Query 193309 CAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACA 193349 ||||||| ||||| || |||||||| || || ||||| ||| Sbjct 84054 CAACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTCACA 84014 Score = 120 bits (132), Expect = 5e-22 Identities = 136/181 (75%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| ||||| || || | || | | ||| ||||||||||| || ||||| || | ||| Sbjct 84421 AATGTTATAATCTGAGAGTGTGCAACCATCTTCTAATTGTTTACCAGCAAATATGAGTCT 84362 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || |||||| ||| ||| ||||| || | ||| | |||| |||||| Sbjct 84361 CTGTTGATCAGGTGGGATTCCTACTTCATCCTGTATCTTTGCTTTAACATTTTCAATAGT 84302 Query 193298 ATCGGA---AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATAT 193354 ||| || || |||||||| ||||| || ||||||| || || | | |||||||| Sbjct 84301 ATCAGAGCTAGGTTCAACTTCAAGAGTAATTCTTTTACCAGTCAGAG---TGACAAATAT 84245 Query 193355 T 193355 | Sbjct 84244 T 84244 Score = 109 bits (120), Expect = 1e-18 Identities = 119/157 (76%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||| ||| || ||||| | | |||||||||||||| || |||||| |||| Sbjct 81415 ATCTTCCAATACTTTACCAGCAAATAAAAGCCTCTGTTGATCAGGTGGGATTCCTACTTT 81356 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTT---CTAGAGT 193321 ||| ||||| |||| ||| ||||| ||||||||| |||| ||||||| | || | Sbjct 81355 ATCCTGTATCTTGGCTTTGATATTCTCAATAGTATCAGAAGGTTCAACTTGAAATTGAAT 81296 Query 193322 TATAGTTTT---ACCTGTTAGCGTTTTTACAAATATT 193355 ||| |||| ||| || || ||||||||||||||| Sbjct 81295 AATATTTTTTGCACCAGTCAGAGTTTTTACAAATATT 81259 Score = 105 bits (116), Expect = 1e-17 Identities = 130/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||||||||| || || | || | | ||| ||||||||||| || ||||| | | || Sbjct 84655 AATATTATAATCTGAGAGTGTACAACCATCTTCTAATTGTTTACCAGCAAATACAAGCCT 84596 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||||| | |||||| ||| ||| ||||| || | ||| | |||| |||||| Sbjct 84595 CTGTTGATCAGATGAGATTCCTACTTCATCCTGTATCTTTGCTTTAACATTTTCAATAGT 84536 Query 193298 ATCGGAAGACTCAA-CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAA 193351 ||| || | | || |||| ||| || |||||||| || || ||||||||||| Sbjct 84535 ATCAGAC-AGTAAAGCTTCAAGAAAAATTGTTTTACCAGTCAGAGTTTTTACAAA 84482 >seq460 Length=79726 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || |||||| | || |||| | | ||||||||||| ||| || ||||||||||| Sbjct 2857 ATCTTCCAATTGTCTACCATCAAATACAAGTCTCTGTTGATTAGGTGGAATTCCTTCTTT 2916 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || ||||| || | || | ||| |||| |||| | |||||||| ||||| || Sbjct 2917 CTCCTGTATCTTTATCTTAACATTCTCAATACTATCAGTGCGTTCAACTTCAAGAGTAAT 2976 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATT 193355 |||||||| || || ||||||| ||||||| Sbjct 2977 GGTTTTACCAGTCAGAGTTTTTAAAAATATT 3007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899503730379360