Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq78 129 5e-25 seq89 114 1e-20 seq85 109 5e-19 >seq78 Length=312069 Score = 129 bits (142), Expect = 5e-25 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || || || || || ||||| || | | Sbjct 172488 ATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCT 172547 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| || |||||||||||||||||||| || |||||||| Sbjct 172548 GACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCCGATCAG 172607 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||| |||| ||| | | | || ||||| ||| Sbjct 172608 CAGCGTCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAAC 172667 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||||||||| ||||| || |||| Sbjct 172668 ATCCAAAAGGAATCTACACTCCATCTTG 172695 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || || ||||| || | | Sbjct 172032 ATGCAAATCTTCGTGAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCT 172091 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || ||||| || Sbjct 172092 GACACTATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAG 172151 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||||| || ||| | | |||| ||||| ||| Sbjct 172152 CAGCGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAAC 172211 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || ||||| ||||| || |||| Sbjct 172212 ATCCAGAAAGAATCCACACTCCATCTTG 172239 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || || || || || ||||| || | | Sbjct 172716 ATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCT 172775 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| |||||||| || || |||||| Sbjct 172776 GATACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCTGATCAA 172835 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||| |||| ||| | | |||| || || ||| Sbjct 172836 CAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACAAC 172895 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||| || ||||| || |||| Sbjct 172896 ATTCAAAAGGAGTCTACACTTCATCTTG 172923 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | ||||| || ||||| || || || || || ||||| || | | Sbjct 171803 GATGCAAATCTTCGTGAAAACACTTACCGGAAAGACCATCACCCTTGAAGTTGAGCCTTC 171862 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| |||||||| || || || || Sbjct 171863 TGACACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGACCA 171922 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || || || || ||| | | | || || || || Sbjct 171923 GCAGCGTCTTATCTTCGCTGGCAAGCAACTTGAAGATGGCCGTACTCTTTCCGACTACAA 171982 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||| ||||| || || || || |||| Sbjct 171983 CATTCAGAAGGAGTCTACCCTTCATCTTG 172011 >seq89 Length=276290 Score = 114 bits (126), Expect = 1e-20 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || |||||||| ||||| || ||||| ||| | | Sbjct 106380 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106439 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||| || || ||||||||||| || || |||||| Sbjct 106440 GATACTATTGAGAATGTTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 106499 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | | || ||||| || ||| |||| ||| ||| | || | |||||||||| Sbjct 106500 CAGAGACTCATATTTGCTGGTAAAATATTGGAAGATGGTCG-TACAC-TCTCAGATTATA 106557 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||||||||| ||| |||| || || Sbjct 106558 ACATTCAAAAGGAAAGTACATTACATTTAGT 106588 Score = 105 bits (116), Expect = 6e-18 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || |||||||| ||||| || ||||| ||| | | Sbjct 106152 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106211 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | | ||| |||||| || || ||||||||||| || || |||||| Sbjct 106212 GATACTATGGAGAATATTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 106271 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | | || ||||| || | ||| |||| ||| ||| | || | |||||||||| Sbjct 106272 CAGAGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCG-TACAC-TCTCAGATTATA 106329 Query 24882 ACATTCAAAAGGAA 24895 |||||||||| ||| Sbjct 106330 ACATTCAAAAAGAA 106343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || |||| ||| ||||| || ||||| ||| | | Sbjct 107805 ATGCAAATATTTGTAAAAACTCTGACTGGTAGAACAATTACTCTTGAAGTTGAACCTTCT 107864 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||| || || ||||||||||| || || |||||| Sbjct 107865 GATACTATTGAGAATGTTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 107924 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | | || ||||| || ||| ||| ||| ||| | || | |||||||||| Sbjct 107925 CAGAGACTCATATTTGCTGGTAAAGTATTGGTAGATGATCG-TACAC-TCTCAGATTATA 107982 Query 24882 ACATTCAAA 24890 ||||| ||| Sbjct 107983 ACATTAAAA 107991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 24746 CTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAA 24805 || ||||| || || | || || || |||| || ||| | || || || ||||||||| Sbjct 105966 CTTGAAGTTGAGGCTAGTGATACCGTTGAAAGTGTGAAAGAGAAAATACAGGACAAAGAA 106025 Query 24806 GGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGA 24863 ||||| || || |||||||| | |||| |||| || ||||| |||| || ||| Sbjct 106026 GGAATCCCACCTGATCAACAGAGACTGATATTTGTTGGTAAACAATTGGAAAATGGTCG- 106084 Query 24864 GAAACATGTCAGATTATAACATTCAAAAGGAA 24895 | || | |||||||||||||||||||| ||| Sbjct 106085 TACAC-TCTCAGATTATAACATTCAAAATGAA 106115 >seq85 Length=280044 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || || || || || ||||| || || || | | Sbjct 114424 GATGCAGATTTTTGTCAAGACTCTCACTGGGAAGACCATCACGCTAGAGGTCGAGCCTTC 114483 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 114484 TGATACCATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 114543 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | |||||||| || |||||| |||||||| ||| | | || |||||||| Sbjct 114544 GCAGCGACTCATCTTTGCTGGTAAACAGTTGGAGGATGGTCGAACCCTCTCTGATTATAA 114603 Query 24883 CATTCA-AAAGGAAT 24896 ||| || ||||| || Sbjct 114604 CATCCAGAAAGGTAT 114618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449822253399440