Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq10 105 1e-16 seq3208 104 4e-16 >seq10 Length=765180 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| |||||||| ||| ||| || || || ||| Sbjct 345291 TGTACTTGGTCACAGCCTTTGTTCCCTCAGAGACGGCATGCTTGGAGAGCTCTCCTGGCA 345232 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || | |||||||| || | | || ||| || |||||| Sbjct 345231 GCCAGAGACGAACTGAAGTCTGGATTTCTCTGCTGGTGATGGTAGACTTCTTGTTGTATT 345172 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| || | || |||| ||||| |||||||| ||||||| Sbjct 345171 GAGCCAGACGGGAGGCCTCAGTAGCAATCTTCTCGAAGATGTCATTGACAAAGGAGTTCA 345112 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||| || |||||||| ||||||||||| ||||||| Sbjct 345111 TGATACTCATGGCCTTTGAGGAGATACCAGTCTCGGGGTGGACCTGCTTGAGGACCTTGT 345052 Query 1485710 A 1485710 | Sbjct 345051 A 345051 >seq3208 Length=6078 Score = 104 bits (114), Expect = 4e-16 Identities = 170/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||||||||| || || || || ||||||||| |||| || || ||| | | Sbjct 4311 TGTATTTGGTGACGGCCTTTGTTCCTTCGGAAACGGCGTGCTTGGCGAGCTCACCGGGTA 4370 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || || ||||| || ||||| || | | || ||| || | |||| |||| Sbjct 4371 ACAGAAGTCGAACGGCAGTTTGGATTTCCCTGCTGGTGATGGTCGATCTTTTGTTGTAGT 4430 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || | || |||| |||| | |||| ||||||||||| || ||| Sbjct 4431 GAGCG--AGTCTTGAAGCTTCGGCAGCGATTCTCTCGAAAATGTCGTTGACGAAACTGTT 4488 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | |||| || || || ||||||||| || || || ||||| || Sbjct 4489 CATGATAGACATAGCTTTGCTGCTGACTCCAGTGTCGGGGTGGACTTGTTTCAGCACTTT 4548 Query 1485708 GTA 1485710 ||| Sbjct 4549 GTA 4551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914821193631722