Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq50 150 1e-30 seq139 149 5e-30 seq11 98.7 7e-15 seq78 96.9 3e-14 seq88 95.1 9e-14 seq97 86.0 5e-11 >seq50 Length=385273 Score = 150 bits (166), Expect = 1e-30 Identities = 265/381 (70%), Gaps = 4/381 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| |||||| ||| || | || ||||| | ||||||| ||||||||||| ||| || Sbjct 317768 GCACTCACATGAAGGATGCTGTTAGCATC-ATGTCAAATGAGACTTCAATTTTAGGAACT 317710 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | ||||| || || || ||| | ||| || ||||| ||| || ||||| Sbjct 317709 CCATGAGGTGCAGGAGGAATGCCAGTCAATTCAAAAGTACCCAGTAGATTGTTGTCTTTT 317650 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | || ||||| || | ||| || || || ||| |||||| || | |||| Sbjct 317649 GTCATGGGCCTCTCCCCCTCAAATACTTGTATGGTGACAGCAGGTTGATTGTCAGCATAA 317590 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 | || || ||||| ||| || || |||| || ||||| | ||| || Sbjct 317589 ATAGTGAACGTGTTGGATGCTTTGGTTGGTATGCGACTGTTCCTCTCAATCAGTTTG-TC 317531 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || | |||||||| ||||| | ||||||||||||||||| ||||| ||||| | | | Sbjct 317530 ATTACTCCACCAGCAGTTTCGATACCAAGAGAAAGAGGAGCAACATCCACTAGCAATACA 317471 Query 281726 TTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | ||||| || || | || | ||| | || ||||||||||| ||||| ||||| Sbjct 317470 TCTTGAACATTACCA-CTGTCATCTCCACTCAAAACAGCTGCTTGAACGGCAGCTCCATA 317412 Query 281785 TGCAACAGCTTCATCAGGATT 281805 |||||||||||||||||| || Sbjct 317411 TGCAACAGCTTCATCAGGGTT 317391 >seq139 Length=216038 Score = 149 bits (164), Expect = 5e-30 Identities = 709/1113 (64%), Gaps = 18/1113 (2%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || |||| ||||| ||||| || |||| ||| ||| | ||||||||| || | || Sbjct 121282 TTGTCAGAGGCAGAGACATTGAGGATACTATTACGATCGATATCAAATGTAACCTGGATC 121223 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | ||||||| ||||| || | | ||| | || || |||| Sbjct 121222 TGAGGCACTCCACGGGGAGCAGGAGGGATGCCAGAGAGCTCAAACTTACCAAGGAGATTA 121163 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || || | | ||| || || ||| ||||||| || | || || Sbjct 121162 TTGTCCTTGGTCATGAAACTTTCTCCTTCATAAACTTGGATAAGGACACTCGGCTGGTTG 121103 Query 281597 TCTGAATAAGTTGTAAATA-CTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 281655 || || |||||||| || |||| | | ||| ||| | || ||||| || | ||| Sbjct 121102 TCAGAGTAAGTTGTGAAGGTCTCTTGCTCTTTCTTTGGGA-TGGTAGTGTTCCTTTTAAT 121044 Query 281656 AATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 281715 | | || | || || || ||| | || | ||| ||||||||||||| || |||| Sbjct 121043 GAGAGCTGTGAAAAATCCTCCTGCTCTCTCAATACCGAGAGAAAGAGGAGCAACGTCAAG 120984 Query 281716 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 281775 || | | || ||| | | ||| | | ||| | ||| ||||| || | ||| Sbjct 120983 GAGAATGAGATCTTGCACCTCCTCACTCTTGTCTCCACTCAAAATGGCTGCATGGACAGC 120924 Query 281776 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 281835 ||| ||||| |||||||||||||||||||| | | | || |||| || |||||||| Sbjct 120923 AGCTCCATAAGCAACAGCTTCATCAGGATTGATGGACTTGTTCAGTTCCTTCCCATTGAA 120864 Query 281836 AAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 || | || | || || | | |||||| ||||||| || || ||||| | |||| Sbjct 120863 GAAGTCCTGCAGGAGCTTCT-GGATCTTAGGGATACGAGTGGAGCCACCAACCAGAACAA 120805 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 | ||||| | || || | | ||| | ||| | || ||||| |||| | Sbjct 120804 TATCATGTATTTGACCTTCGTAGAATTTAGCATCACGGAGTGTCTTCTCAACTAGTTCGA 120745 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | | ||| | ||| |||||||| || ||| | ||| | || | Sbjct 120744 GGATACGATAAAAGAGGTCATTGTTGAGTTCTTCAAAACGAGCACGAGTGATGGT-AGTG 120686 Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || || ||||| || || || | ||| |||| ||||| | | ||||| || || Sbjct 120685 TAGAAGTCAATGCCCTCAAAGAGAGAGTCAATCTCAATAGATGCTTGAGCACTGGAGGAG 120626 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGA 282133 || | ||||| | ||||| || ||||| || | | || | || ||||| Sbjct 120625 AGGATCCTCTTAGCTCTCTCACAGGCGGTCCTGAGACGAC--AAAGAGAATGTGGATTGC 120568 Query 282134 TTCAAATCTGTTTTATAT-TTTCTCTTGAAAT--CTTCAACACACCATGTTACAAGACGA 282190 | | || | || || | ||| ||||||| |||| | | | | || | ||| Sbjct 120567 TGGACATGTCCTTCATGTATTTACATTGAAATTCCTTC-ATAAAATAGTCAACCATGCGA 120509 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 ||| ||||| ||||||||||| | || || || || || | || |||| || | Sbjct 120508 GAATCGAAATCCTCACCTCCCAAGTGTGTGTTGCCGGAAGTGGACCTCACTTCAAATATG 120449 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 || || |||| | | | | ||| | | | |||||||| |||||| || || Sbjct 120448 CCGTCCTCAATTGTAAGGATGGAGACACTAAAATTACTACCACCCAAATCAAAGATGAGG 120389 Query 282311 ACATTCAT---TTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || ||| | |||||| || || || || ||||| || |||| |||||||| || Sbjct 120388 ACGTTCCTCTCTTCTTTAACT---TTCTTGTCGAGACCGTAGGCAATGGCAGCAGCTGTG 120332 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || || || || | || || || |||||||| || |||| || ||||| || || Sbjct 120331 GGCTCGTTGATGATACGCAGGACGTTGAGACCAGCTATGGTTCCGGCGTCTTTTGTTGCC 120272 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | |||||| || || || || ||||| || ||||| || |||| || || || Sbjct 120271 TGACGTTGTGAGTCATTGAAGTAAGCAGGGACTGTAATGACTACATCAGTGACAGTCTTC 120212 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTA 282520 |||| ||||| ||||| | |||||||| Sbjct 120211 CCAAGGTAAGCCTCAGCTGTCTCCCTCATTTTA 120179 Score = 118 bits (130), Expect = 8e-21 Identities = 242/360 (67%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 |||| ||||||||| ||||||||||| | ||| | || ||| | |||| || Sbjct 127074 ACGAGAATCAAAATCCTCACCTCCCAAGTGAGTGTCACCAATAATAGACTTCACTTCAAA 127015 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | |||| |||| | | | | |||||| | || ||||||| |||||| || Sbjct 127014 TATGCCATTCTCAATTGCAAGGATGGAGACATCAAAATTACCCCCACCCAAATCAAAGAT 126955 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || | |||| | ||| | | ||||| || |||| || |||| |||||||| || Sbjct 126954 GAGGATATTCCTCTCTGTCCCAGCTTTTTTGTCCAGACTGTAGGCAATGGCAGCAGCCGT 126895 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || || || | | || || ||||||||||| |||| |||||||| || || Sbjct 126894 GGGCTCGTTGATGATACGTAGGACGTTGAGACCAGCAATAATTCCAGCATCTTTTGTTGC 126835 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 ||| | ||||||| || || || |||||||| ||||| || |||| || || || Sbjct 126834 TTGACGTTGTGAAATATTGAAGTAAGCAGGAACTGTAATGACTACATCAGTGACAGTCTT 126775 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 |||| ||||| ||||| | |||||||| | | | || || ||||| | ||| Sbjct 126774 CCCAAGGTAAGCCTCAGCTGTCTCCCTCATTTTAGTGAGGACCACAGAGGAAATCTCTTC 126715 >seq11 Length=728327 Score = 98.7 bits (108), Expect = 7e-15 Identities = 108/143 (76%), Gaps = 8/143 (6%) Strand=Plus/Minus Query 637113 AAAGAAAATT-------ATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATA 637165 |||||||||| ||||| |||| ||| ||||||||| |||||||||||||||| Sbjct 260448 AAAGAAAATTGAGAGTAATTGTTGATTTTTCATCTCCAAATGTTGCTAAAGAAATGCACG 260389 Query 637166 TTGGACATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTG 637225 |||| ||| | |||||||| |||||||| || | || ||| | |||| ||| | | || Sbjct 260388 TTGGTCATCTCAGATCAACAATTATTGGAGAGACAATATGTCGCTTATTGGAATTCTTTG 260329 Query 637226 GACACGATGT-TTATCGTATTAA 637247 | || ||||| ||| |||| || Sbjct 260328 GCCATGATGTGTTAAGGTATGAA 260306 >seq78 Length=312069 Score = 96.9 bits (106), Expect = 3e-14 Identities = 306/469 (65%), Gaps = 18/469 (4%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||| ||||| | || ||||| || |||| | | ||| |||||||| ||||| || | Sbjct 269606 CGGCGGTCACGATTAGGATACCGTTTTCATCAATTTGAAAAGTGACTTCGATTTGGGGTA 269665 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 |||| || ||||||||||||| || | | || ||| |||| ||| || ||| |||| Sbjct 269666 CCCCCCTTGGAGCAGGTGGGATTCCGTTGAGATCAAACTTTCCGAGAAGATGATTGTCTT 269725 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT---TGATTATCTG 281600 | || | | |||||||||||| | || || || ||| ||| || ||||| | Sbjct 269726 TCGTCATGGGCCTTTCACCCTCGAATACCTGTATCGT---TACGGTTGGCTGGTTATCAG 269782 Query 281601 AATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATA 281659 || ||||| |||| |||| || || ||| || || |||||| | || | Sbjct 269783 AAGCAGTTGAGAATA-TCTGTGACTTCTTAGTCGGGATCACTGTGTTACGGGGGATCAGT 269841 Query 281660 TTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGG 281719 || ||||| | || || |||| || | ||||| | |||||| | || || | ||| Sbjct 269842 TTTGTCATGACTCCGCCCACTGTCTCAATCCCAAGGGTAAGAGGGTTAACGTCGAGGAGG 269901 Query 281720 ACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCA 281779 | | || | | || || || || || ||| | ||||||| ||||| Sbjct 269902 AGGA------GACCGTCTGTATTAGATTCTCCGCTTAGGATACCGGCTTGAACGGCAGCT 269955 Query 281780 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 ||||| || || || || ||||| || | | ||| ||| ||| || ||||| || Sbjct 269956 CCATAAGCCACGGCCTCGTCAGGGTTGATACCGCGGTTTGGTTCTTTGCCGTTGAAGAAG 270015 Query 281840 T--TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAAC 281886 | ||| | ||||| ||||| || ||||| | ||||| || || Sbjct 270016 TCCTTG--ACGAGTTGCTGGACCTTGGGGATACGGGTGGATCCCCCGAC 270062 >seq88 Length=277867 Score = 95.1 bits (104), Expect = 9e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 607611 GTAATCTATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAG 607670 ||| | ||| |||||||||||||||||||||| || | || || || ||| | | Sbjct 227466 GTATTGTATGTGTGTGGTACTGATGAATATGGTACAGCGACTGAGACTAAGGCTATTGAA 227525 Query 607671 GAAGGTGTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTAT 607730 || || | ||| | ||| ||||||| || |||||||| |||| | ||||| ||| Sbjct 227526 GAGGGACTGACTCCTAAGGAAATTTGTGACAAATATTTTGAAATACATGACAAAGTCTAT 227585 Query 607731 GATTGGTTTAATATTGAATTTGATGTTTTTGG 607762 | |||||||| ||||| |||||| ||||||| Sbjct 227586 AAGTGGTTTAACATTGATTTTGATATTTTTGG 227617 Score = 95.1 bits (104), Expect = 9e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 607611 GTAATCTATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAG 607670 ||| | ||| |||||||||||||||||||||| || | || || || ||| | | Sbjct 234729 GTATTGTATGTGTGTGGTACTGATGAATATGGTACAGCGACTGAGACTAAGGCTATTGAA 234788 Query 607671 GAAGGTGTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTAT 607730 || || | ||| | ||| ||||||| || |||||||| |||| | ||||| ||| Sbjct 234789 GAGGGACTGACTCCTAAGGAAATTTGTGACAAATATTTTGAAATACATGACAAAGTCTAT 234848 Query 607731 GATTGGTTTAATATTGAATTTGATGTTTTTGG 607762 | |||||||| ||||| |||||| ||||||| Sbjct 234849 AAGTGGTTTAACATTGATTTTGATATTTTTGG 234880 >seq97 Length=262405 Score = 86.0 bits (94), Expect = 5e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 163966 TCACTCGCAATCTCAATAATATTATTGACATTAATTTCTATCCTCTCGATAAAACTCGGA 164025 |||||||||| ||||| | || |||||||| || | || || | | | |||||| Sbjct 111226 TCACTCGCAACCTCAACAGGATCATTGACATCAACTATTACCCAGTACCTGAGGCTCGGA 111285 Query 164026 TTACCAATCTTCGTGATCGTCCTATTGGTATTGGAGTTCAGGGATTGGCTGATGTATTTG 164085 | || || || ||||||| ||||||||||| || || || | ||||| ||| Sbjct 111286 CATCAAACCTCCGCCATCGTCCCATTGGTATTGGGGTACAAGGTCTCGCTGACACCTTTA 111345 Query 164086 CCATGTTTAAGACTCCTTTTGATTCGGAAATTGCTCGTGATCTCAATCGTAAAATTTTCG 164145 | | | | | | | ||||||| ||| |||| || |||||||| | || |||| Sbjct 111346 TCCTAATGAGGTATTCGTTTGATTGTGAAGAGGCTCAGGAGCTCAATCGGATGATATTCG 111405 Query 164146 AAACAATTTATTATGGAGCTTTAAC 164170 | ||||||||||||| |||||| || Sbjct 111406 AGACAATTTATTATGCAGCTTTGAC 111430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739972614819948