Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq78 131 2e-25 seq89 104 2e-17 >seq78 Length=312069 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||||| |||||| |||||||| ||||||||||| || |||| ||||| Sbjct 172469 AACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTC 172410 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 || || || |||||| |||| ||||| ||||||||||| || || ||||| ||||| Sbjct 172409 AAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTG 172350 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||| || ||||| | ||| | || || | || || ||||||| ||| | ||||| Sbjct 172349 AATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTT 172290 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| || || || || |||||||| Sbjct 172289 TCCGGTCAAAGTCTTGACAAAGATTTGCAT 172260 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||| | ||||||||| ||||| |||||||||||| | || | ||||| Sbjct 172697 AACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTC 172638 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 | || || || ||| |||| ||||| ||||||||||| || || ||||||||||| Sbjct 172637 CAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTG 172578 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||||| ||| | | ||| | ||||| | || || ||||||| ||| | ||||| Sbjct 172577 GATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTT 172518 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | ||| |||||||| || ||||| Sbjct 172517 TCCGGTAAGTGTCTTTACGAAAATCTGCAT 172488 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | || | ||| | ||| | ||| |||||||| || ||||||||||| | Sbjct 172258 CCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGAC 172199 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| || || || || ||| |||| ||||| ||||| ||||| || Sbjct 172198 AAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGG 172139 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || || | | || | ||||| | || || ||| Sbjct 172138 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAACT 172079 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| ||||| | ||| || ||||| |||||||| Sbjct 172078 TCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 172032 >seq89 Length=276290 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| ||||| ||| | |||||||| | ||| ||||||||| ||||| ||||| | Sbjct 106379 GCCACCTCGACGACGAAGTACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATC--T 106322 Query 137244 CATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | ||| ||| ||||| | |||| |||||||| | || || | || ||||| || Sbjct 106321 GAGAGTGTACGACCATCTTCCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGT 106262 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || |||||||| || || ||| ||| | | |||| || || | ||||| Sbjct 106261 GGGATTCCTTCTTTATCCTGTATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCA 106202 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||||| ||| | || || || |||| |||||||| ||||||||||| Sbjct 106201 ACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 137190 TCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGT 137249 ||| |||| | |||||||| | |||| ||| ||||| ||||| ||||| | | || Sbjct 106601 TCGAAAACAAAGTACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATC--TGAGAGT 106544 Query 137250 GCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG 137307 | ||| ||||| | | |||||||||| | || || | || ||||| || || || Sbjct 106543 GTACGACCATCTTCCAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATT 106484 Query 137308 CCTTCTTTGTCG-GTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTACTT 137365 |||||||| || ||| | |||| |||| | | || | || || | ||||| |||| Sbjct 106483 CCTTCTTTATCCTGTA--TCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTT 106426 Query 137366 CAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| ||| | || || || |||| |||||||| ||||||||||| Sbjct 106425 CAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488462181093600