Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq78 120 3e-22 seq85 95.1 1e-14 >seq78 Length=312069 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || |||||||| || ||| | | | || || |||||||| || Sbjct 172228 GTGGATTCTTTCTGGATGTTGTAATCAGACAAAGTGCGGCCA-TCTTCAAGCTGCTTTCC 172170 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||||||||| ||||| ||||||||||| |||||| ||| Sbjct 172169 GGCAAAGATAAGACGCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTAGCCTT 172110 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | ||||| || || | |||| ||| || ||||| || || Sbjct 172109 GACGTTCTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGT 172050 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 172049 CTTCACGAAGATTTGCAT 172032 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| | || | | | || || || | Sbjct 172007 ATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCA-TCTTCAAGTT 171949 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || ||||||||||| || ||||| ||||||||||| ||||| Sbjct 171948 GCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCT 171889 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | ||||| | ||||| || || | ||||| ||| || |||| Sbjct 171888 TGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTGATGGTCTTTCCGG 171829 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| || ||||| Sbjct 171828 TAAGTGTTTTCACGAAGATTTGCAT 171804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | |||||| || || | || || |||||||| ||||| ||||| ||||| ||| Sbjct 172642 TCTTCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTG 172583 Query 133566 TCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| |||| | | | |||| ||||| | ||||| || || | |||| Sbjct 172582 TCTTGGAT-TTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGAT 172524 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||| || || ||||||||||||||||| Sbjct 172523 GGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172488 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | |||||| || || | || || ||||| || || || ||||| ||||||||| Sbjct 172870 TCTTCCAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTG 172811 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||||| || || | ||||| || || | |||| | Sbjct 172810 TCCTGGATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATG 172751 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || ||||||||||||||||| Sbjct 172750 GTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172716 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || |||||||| || || |||||||| || ||| | | | || || ||||||||||| Sbjct 172456 GTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCA-TCTTCAAGCTGCTTGCC 172398 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||| ||||| || || ||||||||||| ||||| || Sbjct 172397 AGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTGAATCTTGGCTTT 172338 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || |||| ||||| || || | || | ||| || ||||||| ||| Sbjct 172337 TACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTTTCCGGTCAAAGT 172278 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 172277 CTTGACAAAGATTTGCAT 172260 >seq85 Length=280044 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | ||| || || || | ||||| ||||||||||| |||||||||||||||||| Sbjct 114579 TCCTCCAACTGTTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTG 114520 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | || || | ||||| || || | |||| | Sbjct 114519 TCCTGGATCTTGGCCTTTACATTTTCTATGGTATCAGAAGGCTCGACCTCTAGCGTGATG 114460 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || || ||||||||||| Sbjct 114459 GTCTTCCCAGTGAGAGTCTTGACAAAAATCTGCAT 114425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483339839101520