Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq89 102 5e-17 seq78 100 2e-16 >seq89 Length=276290 Score = 102 bits (112), Expect = 5e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | || ||||||| ||| || || ||||| ||||| ||||| ||| Sbjct 106150 CCACCTCTAAGACGAAGTACTAAATGTAAAGTACTTTCATTTTGAATGTTATAATCTGAG 106091 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | | ||||||||||| || |||| |||| | ||| ||||| | || Sbjct 106090 AGTGTACGACCATTTTCCAATTGTTTACCAACAAATATCAGTCTCTGTTGATCAGGTGGG 106031 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCA 33673 | ||||||||||| ||||||| ||||| Sbjct 106030 ATTCCTTCTTTGTCCTGTATTTTCTCTTTCA 106000 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| ||| | || ||||| | || || |||||||| ||||| ||||| ||| Sbjct 106378 CCACCTCGACGACGAAGTACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTGAG 106319 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || ||||||||| | || ||||| || | | ||| ||||| | || Sbjct 106318 AGTGTACGACCATCTTCCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGG 106259 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || || || || || || | || || | ||| || Sbjct 106258 ATTCCTTCTTTATCCTGTATCTT-TGCTTTAATATTCTCCATAGTATCAGAAGGTTCAAC 106200 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || |||||||| || | ||||||||||| || ||||| Sbjct 106199 TTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || ||||||| || || || ||||| ||||| ||||| |||||||| || | || ||| Sbjct 106588 ACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCC 106529 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||| ||| || ||||| || | | ||| ||||| | || | |||||||| || Sbjct 106528 AATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGT 106469 Query 33661 ATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || || ||||| ||| || || | ||| || |||| || || ||||| Sbjct 106468 ATCTT-TGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTT 106410 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | ||||||||||| || ||||| Sbjct 106409 ACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 >seq78 Length=312069 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| |||||||||||||| || || || | || ||||| || ||||||||||| Sbjct 172678 TCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTTCCGGCAAAG 172619 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | |||||||||||| | || | ||||||||||| ||||| | || ||||| Sbjct 172618 ATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTT-AGCTTTAACATT 172560 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| | || || |||| ||||| || || || || | || ||||| Sbjct 172559 TTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTAC 172500 Query 33738 AAAGATCTGCAT 33749 || |||||||| Sbjct 172499 GAAAATCTGCAT 172488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328650326540160