Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq78 129 1e-24 >seq78 Length=312069 Score = 129 bits (142), Expect = 1e-24 Identities = 157/209 (75%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| || || || ||||| || |||||| | ||||| || |||||| Sbjct 172491 CAGAT-TTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCTGA 172549 Query 206232 CACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 ||| | ||| || ||||| ||| || ||||| ||||||||||| || || | Sbjct 172550 CACTATTGAAAATGTTAAAGCTAAA-ATCCAAGACAAAGAAGGAATCCCACCCGATCAGC 172608 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | | |||||||| ||||||||||||||||||||||| | ||| | ||||||||||| Sbjct 172609 AGCGTCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAACA 172668 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||| || || ||||| || || |||||| Sbjct 172669 TCCAAAAGGAATCTACACTCCATCTTGTT 172697 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||| | ||||| || |||||||||| |||| Sbjct 171819 AAAACACTTACCGGAAAGACCATCACCCTTGAAGTTGAGCCTTCTGACACAATCGAGAAC 171878 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || |||||||| || ||| || | ||||||||| Sbjct 171879 GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAGCAGCGTCTTATCTTC 171938 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | |||||||| | ||| | |||| |||||| | ||||| |||||| Sbjct 171939 GCTGGCAAGCAACTTGAAGATGGCCGTACTCTTTCCGACTACAACATTCAGAAGGAGTCT 171998 Query 206365 ACTCTTCACCTTGTT 206379 || ||||| |||||| Sbjct 171999 ACCCTTCATCTTGTT 172013 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || |||||| | ||||| || ||||||||| | || Sbjct 172047 AAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCTGACACTATTGAGAAC 172106 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || |||||||| || ||| || | |||||||| Sbjct 172107 GTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAGCAGCGTCTTATCTTT 172166 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | |||||||| | |||||| | ||||||||| |||||||||| || Sbjct 172167 GCCGGAAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAACATCCAGAAAGAATCC 172226 Query 206365 ACTCTTCACCTTGTT 206379 || || || |||||| Sbjct 172227 ACACTCCATCTTGTT 172241 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || ||||| || || ||| | ||||| || ||| || Sbjct 172263 CAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTTGAAGTTGAGCCTTCCGAT 172322 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| ||||| ||||||||||| || ||||||||| || || || Sbjct 172323 ACCATTGAAAACGTAAAAGCCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCAGCAG 172382 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || |||||| | |||||||| | |||||| | ||||||||| || Sbjct 172383 CGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAACATC 172442 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 || ||||||||||| ||||| |||||| Sbjct 172443 CAAAAAGAGTCTACACTTCATCTTGTT 172469 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| || || || ||||| || |||||| | ||||| || |||||| Sbjct 172719 CAGAT-TTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCTGA 172777 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||| ||||| || || || |||||||| || || || Sbjct 172778 TACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCTGATCAACA 172837 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | |||||||| || |||||||||||||||||||| | |||||| | || |||||| | Sbjct 172838 GCGTCTTATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACAACAT 172897 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || |||||||| ||||| |||||| Sbjct 172898 TCAAAAGGAGTCTACACTTCATCTTGTT 172925 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 |||||| ||||| ||||||||||| |||| || || |||| |||||| | |||||||| Sbjct 172469 AACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTC 172410 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || || |||||||| || || ||| Sbjct 172409 AAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGA 172376 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 |||||| || || || || |||||||||| || || |||| |||||| | |||||||| Sbjct 172241 AACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTC 172182 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||| |||||||| || || || Sbjct 172181 AAGCTGCTTTCCGGCAAAGATAAGACGCTGCTG 172149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181617926425558